View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_high_9 (Length: 379)
Name: NF17027_high_9
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 47638212 - 47638577
Alignment:
| Q |
1 |
ttgacttataatagtcacatttagaggagtctcctttgaattttctgcctctaattctagtgctagtatttttctttttaaaaagtcaggtgatcaacca |
100 |
Q |
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| T |
47638212 |
ttgacttataatagtcatatttagaggagtctcctttgaattttctgcctctaattctagtactagtatttttctttttaaaaagtcaggtgatcaacca |
47638311 |
T |
|
| Q |
101 |
atggcatgcaagtcaagtcattgtttgactctccttccacactgatcatttagagtagtttctgttgcagtcaggactcgccgtcgctgtacagaatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47638312 |
atggcatgcaagtcaagtcattgtttgactctccttccacactgatcatttagagtagtttctattgcagtcaggactcgccgtcgctgtacagaatttc |
47638411 |
T |
|
| Q |
201 |
ctcgcaaactcatcgtcgccatcacttatcatccacctgattctaaccagtggaagattaaattgcataacaaaagaaaggtgtatcacctgttactatt |
300 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47638412 |
ctctcaaactcatcgtcgccatcactcatcatccacctgattctaaccagtggaagattaaattgcataacaaaagaaaggtgtatcacctgttactatt |
47638511 |
T |
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| Q |
301 |
tctctcaattcacaatactatcttttcatctcaaaatgtatatcatcaattcctcaacaacaacac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47638512 |
tctctcaattcacaatactatcttttcatctcaaaatgtatatcatcaattcctcaacaacaacac |
47638577 |
T |
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