View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17027_low_11 (Length: 375)
Name: NF17027_low_11
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 40894577 - 40894232
Alignment:
| Q |
18 |
ttctcaaatttgaaatcaatcagaaagaacaatgatacattattattattatcatcagtaaattaagcacgcaaatgaaatcaaccagaaagaacaatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40894577 |
ttctcaaatttgaaatcaatcagaaagaacaatgatacattattattattatcatcagtaaattaagcacgcaaatgaaatcaaccagaaagaacaatga |
40894478 |
T |
|
| Q |
118 |
tacctaccgaaaaactgatagctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctcactgatttgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40894477 |
tacctaccgaaaaactgatagctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctcactgatttgca |
40894378 |
T |
|
| Q |
218 |
ggtgcctggaggaaggagcagaggtttttctattgaagccagtcaagtgcatgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40894377 |
ggtgcctggaggaaggagcagaggtttttctattgaagccagtcaagtgcatgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagttg |
40894278 |
T |
|
| Q |
318 |
gttctctcaaaagaagccaatcatcgcatgagtgcagttcatctct |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40894277 |
gttctctcaaaagaagccaatcatcgcatgagtgcagttcatctct |
40894232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 138 - 316
Target Start/End: Original strand, 44155367 - 44155549
Alignment:
| Q |
138 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
44155367 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
44155466 |
T |
|
| Q |
236 |
cagaggtttttctattgaa---gcca---gtcaagtgcatgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
316 |
Q |
| |
|
||||| ||| | | || | || ||||||||| ||||||| |||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
44155467 |
cagag----ttccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
44155549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 44214434 - 44214544
Alignment:
| Q |
153 |
tatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctcactgatttgcaggtgcctggaggaaggagcagaggtttttctattg |
252 |
Q |
| |
|
|||||| ||| ||||||| ||| || ||| |||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||| |||| | || |
|
|
| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcactaatttgcaggtgtttggaggaaggagcagaggattttttgtta |
44214533 |
T |
|
| Q |
253 |
aagccagtcaa |
263 |
Q |
| |
|
||||||||||| |
|
|
| T |
44214534 |
aagccagtcaa |
44214544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 44214565 - 44214608
Alignment:
| Q |
269 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
44214565 |
tgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaa |
44214608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 44154799 - 44154841
Alignment:
| Q |
76 |
taaattaagcacgcaaatgaaatcaaccagaaagaacaatgat |
118 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
44154799 |
taaattaagcacgcaaacgaaatcaatcagagagaacaatgat |
44154841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University