View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_low_12 (Length: 340)
Name: NF17027_low_12
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 42011582 - 42011893
Alignment:
| Q |
20 |
ccttagaaggtacacgtgatcaaaattcatggtgtgtcagagtgagatcatacaaacccacttctcaaaaatcacaactgaactttgcaagagggattac |
119 |
Q |
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| T |
42011582 |
ccttagaaggtacacgtgatcaaaattcatggtgtgtcagagtgagatcatacaaacccacttctcaaaaatcacaactgaactttgcaagagggattac |
42011681 |
T |
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| Q |
120 |
agtccagagcgcagccacaaaaccagccaagtcaccaggtatcttttctgagttactcttcctgaattaaattgttacagcactttaaagacgtgataga |
219 |
Q |
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| T |
42011682 |
agtccagagcgcagccacaaaaccagccaagtcaccaggtatctgttctgagttactcttcctgaattaaattgttacagcactttaaagacgtgataga |
42011781 |
T |
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| Q |
220 |
aacttaacttaacttcactttgtttggaggtaatagctgaagaagaatggaaagttaagcgagaattactgctgcaaaaaagggtaaagctctacctctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011782 |
aacttaacttaacttcactttgtttggaggtaatagctgaagaagaatggaaagttaagcgagaattactgctgcaaaaaagggtaaagctctacctctc |
42011881 |
T |
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| Q |
320 |
tatcatctgtgc |
331 |
Q |
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|||||||||||| |
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| T |
42011882 |
tatcatctgtgc |
42011893 |
T |
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