View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17027_low_14 (Length: 325)

Name: NF17027_low_14
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17027_low_14
NF17027_low_14
[»] chr8 (1 HSPs)
chr8 (1-293)||(41021955-41022247)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 41022247 - 41021955
Alignment:
Q  1 atcaccaataacattacaacagcttgttgaaagggacttggccagacgcgaatcatggatgaatatccataatgatgcagaagaaattgcaatggaggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41022247 atcaccaataacattacaacagcttgttgaaagggacttggccagacgcgaatcatggatgaatatccataatgatgcagaagaaattgcaatggaggtg 41022148  T
Q  101 gagaaaaatgttttggaaacactggttttggaaatcgtgtctgagatgaatatatcatagaagtgatacattgcattgaacttaggttccatggaagata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41022147 gagaaaaatgttttggaaacactggttttggaaatcgtgtctgagatgaatatatcatagaagtgatacattgcattgaacttaggttccatggaagata 41022048  T
Q  201 gaaatagaatgtcttgttttatttctagctacatttaacattcatctcactatcacttagaaacaattgttcattttacaaactatttaaaat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41022047 gaaatagaatgtcttgttttatttctagctacatttaacattcatctcactatcacttagaaacaattgttcattttacaaactatttaaaat 41021955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University