View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_low_16 (Length: 285)
Name: NF17027_low_16
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 36192592 - 36192467
Alignment:
| Q |
51 |
taccttcattcaaaaagatcgatagctcctttaaagagtggaaaattgggacaccagaagagagagagctgtttct--ccatctctaatgttttgaagga |
148 |
Q |
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| T |
36192592 |
taccttcattcaaaaagatcgatagcttcttgaaagagtggaaaattgggacaccggaacagagagagctgtttctcaccatctctaatgttttgaagga |
36192493 |
T |
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| Q |
149 |
taacaaaaggtatagcacatagttca |
174 |
Q |
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| T |
36192492 |
aaacaaaaggtatagcacatagttca |
36192467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 36192430 - 36192332
Alignment:
| Q |
178 |
cttctctttggagtaggaataagaatataacataagtttattg-catcagtctcactacccattcggtcagtagtcatatatccacacctcaatctctg |
275 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36192430 |
cttctctttggagtaggaattagaatataacataagtttattgtcatcagtctcactacccattcggtcagtaatcatatatccacacctcaatctctg |
36192332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 36192756 - 36192723
Alignment:
| Q |
18 |
ttttgaaaatgcttgccactgtgactacttattt |
51 |
Q |
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| T |
36192756 |
ttttgaaaatgcttgccactgtgactacttattt |
36192723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 5054901 - 5055023
Alignment:
| Q |
51 |
taccttcattcaaaaagatcgatagctcctttaaagagtggaaaattgggacaccagaagagagagagctgtttct--ccatctctaatgttttgaagga |
148 |
Q |
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| T |
5054901 |
taccttcattcaaaaagattgatagcttcttgaaagagtggaaaattgggacaccagaacagagagagctgtttctcaccatctctaatgttttgaagga |
5055000 |
T |
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| Q |
149 |
taacaaaaggtatagcacatagt |
171 |
Q |
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| T |
5055001 |
aaacaaaaggtatagcacatagt |
5055023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 5055063 - 5055160
Alignment:
| Q |
178 |
cttctctttggagtaggaataagaatataacataagtttattg-catcagtctcactacccattcggtcagtagtcatatatccacacctcaatctctg |
275 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| |
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| T |
5055063 |
cttctctttggagtaggaataagaatataacataag-ttattgtcatcagtctcactacctatttggtcaggagtcatatatccacaccacaatctctg |
5055160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 5054736 - 5054766
Alignment:
| Q |
18 |
ttttgaaaatgcttgccactgtgactactta |
48 |
Q |
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| T |
5054736 |
ttttgaaaatgcttgccactgtgactactta |
5054766 |
T |
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