View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_low_18 (Length: 250)
Name: NF17027_low_18
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42012053 - 42012291
Alignment:
| Q |
1 |
caatcttaggatatgtgatttctcatttatatcacatgcaagtttatctttgatctaatattgcaggtaaaaagtgtggagccaaaggaagctctgcgcc |
100 |
Q |
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| T |
42012053 |
caatctttggatatgtgatttctcatttatatcacatgcaagtttatctttgatctaatattgcaggtaaaaagtgtggagccaaaggaagctctgcgcc |
42012152 |
T |
|
| Q |
101 |
ttcagaaagaaaataattttgtgattcttgatgtaaggccagaagcagagttcaaggaggttagtgaacaagttttacaagccttgttttccagctccta |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42012153 |
ttcaaaaagaaaataattttgtgattcttgatgtaaggccagaagcagagttcaaggaggttagtgaacaagttttacaagccttgttttccagctccaa |
42012252 |
T |
|
| Q |
201 |
tgtgcctgtacattcatgttgcattttctgtgtctctct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42012253 |
tgtgcctgtacattcatgttgcattttctgtgtctctct |
42012291 |
T |
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