View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17027_low_19 (Length: 247)
Name: NF17027_low_19
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 4598959 - 4599165
Alignment:
| Q |
31 |
ttattagacaattgatttgattaggaaagaaccaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtnnnnnnnnn |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598959 |
ttattagacaattgatttgattaggaaagaaccaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtaaataaaaa |
4599058 |
T |
|
| Q |
131 |
nnnnnnnnnnnngtatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatc |
230 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4599059 |
gaaaatttaaaagaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatc |
4599158 |
T |
|
| Q |
231 |
ccctttg |
237 |
Q |
| |
|
||||||| |
|
|
| T |
4599159 |
ccctttg |
4599165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 4623500 - 4623592
Alignment:
| Q |
145 |
atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4623500 |
atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaataccctttg |
4623592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 25016383 - 25016459
Alignment:
| Q |
157 |
tattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccc |
233 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
25016383 |
tattaccattttctgttatgtaaatcaatggattattatactttgtctttgtgtgcaacagtagttcctgaatcccc |
25016459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 25037649 - 25037722
Alignment:
| Q |
160 |
taccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccc |
233 |
Q |
| |
|
|||||||||| |||||| |||| ||| |||||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
25037649 |
taccattttcggttatgtaaatcacagggttgttatactttgtctttgtgtacaacagtagttcttgaatcccc |
25037722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 18805481 - 18805394
Alignment:
| Q |
150 |
atataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttg |
237 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
18805481 |
atataagtattaccattttctgttatgtaaataacaggattgttatactttttctttatgtacaacagtagctcttgaatcccctttg |
18805394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University