View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_low_2 (Length: 774)
Name: NF17027_low_2
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 20 - 765
Target Start/End: Complemental strand, 25893346 - 25892589
Alignment:
| Q |
20 |
cgtggaagatacaccaaaggaggatggacaggatctccatgaaccaaagtcaagaccactttcaccttatgcaatgtaagttgattccaacttgccataa |
119 |
Q |
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| T |
25893346 |
cgtggaagatacaccaaaggaggatggacaggatctccatgaaccaaagtcaagaccactttcaccttatgcaatgtaagttgattccaacttgccatca |
25893247 |
T |
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| Q |
120 |
atatttgttatttattctccaaagattcttcattcgttattatagaagagagaaagagaggagcctgaattccccaaggtcaaggaatcct--------g |
211 |
Q |
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| T |
25893246 |
atatttgttatttattctccaaagattcttcattcgttattatagaagagagaaagagaggagcctgaattccccaagatcaaggaatcctccagtcatg |
25893147 |
T |
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| Q |
212 |
cagtcactgcattggaagccgttttggttgaaatcggatggtccagattgacattatgatcttatgaaaataaacttttcaggtatgaggacttgaagcc |
311 |
Q |
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| T |
25893146 |
cagtcactgcattggaagccgttttggttgaaatcggatggtccagattgacattatgatcttatgaaaatgaacttttcaggtatgaggacttgaagcc |
25893047 |
T |
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| Q |
312 |
tcctgcatcaccatcaccttccttcagacaatcctaggaactgcctcctgcctatggaatcagataaggttagagatgcaaatcatta--tatgtaaagt |
409 |
Q |
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| T |
25893046 |
tcctgcatcaccatcaccttccttcagacaatcctaggaactgcctcctgcctatggaatcagataaggttagagatgcaaatcattacatatgtaaagt |
25892947 |
T |
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| Q |
410 |
gtactcttgattatgtacactacataccctggactcataattgtgatatatttttctggagcaaataggattattgtattgaagaggattctcactaaaa |
509 |
Q |
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| T |
25892946 |
gtactcttgattatgtacactacataccctggactcataattgtgatatatttttctggagcaaataggattattgtattgaagaggattctcactaaaa |
25892847 |
T |
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| Q |
510 |
tatgaagatggaagcaactaagtgaatggaaattttcagccatgccatttatttcttgatgactttttgaggaaagtcactcaacgagcactgttgtt-- |
607 |
Q |
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| T |
25892846 |
tatgaagatggaagcaactatgtgaatggaaattttcagccatgccatttatttcttgatgactttttgaggaaagtcactcaacgagcactgttgtttt |
25892747 |
T |
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| Q |
608 |
ttttatatatacaatttacttttcctatgttgcaatttaaataaggaaaaggtataacttttcagaatcagttcttccatttatgctatagtactttcat |
707 |
Q |
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| T |
25892746 |
ttttatatatacaatttacttttcctatgttgcaatttaaataaggaaaaggtattacttttcataatcagtttttccatttatgttatagtactttcat |
25892647 |
T |
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| Q |
708 |
tttcatgttgcccactctttaagtatgagaaaatatataaacattttgagtaagctca |
765 |
Q |
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| T |
25892646 |
tttcatgttgcccattctttaagtatgagaaaatatataaacattttgagtaagctca |
25892589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 25894508 - 25894415
Alignment:
| Q |
21 |
gtggaagatacaccaaaggaggatggacaggatctccatgaaccaaagtcaagaccactttcaccttatgcaatgtaagttgattccaacttgc |
114 |
Q |
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| T |
25894508 |
gtggaagataccccaaaggatgatggacagaatctccatgagccaaagtcaagaccactttcaccttatgcaatgtaagttgatttcaacttgc |
25894415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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