View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_low_3 (Length: 755)
Name: NF17027_low_3
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 7904874 - 7904466
Alignment:
| Q |
18 |
actttttcatttaggattcatctctagagtgaaatttgtgtatatttctagtcattaggaaatgaccctaggatcttggtttagttagcttagctgtatt |
117 |
Q |
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| T |
7904874 |
actttctcatttaggattcatctctagagtgaaatttgtgtatatttctagtcattaggaaatgaccctaggatcttggtttacttagcttagctgtatt |
7904775 |
T |
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| Q |
118 |
tcatactttgttctccattagcatcatcaaataaatgtacctattgaaaatttggataaaaatggtgannnnnnnnaagcaattcagttttgttatgtat |
217 |
Q |
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| T |
7904774 |
tcatactttgttctccattagcatcatcaaataaatgtacctattgaaaatttggataaaaatggtgattttttttaagcaattcagttttgttatgtat |
7904675 |
T |
|
| Q |
218 |
ttgttattgcaagagagctgctctcatgcgcgaggcgcatgggttatgtgtttctaggggtttttgcttctgccatgtacgcgaggcacaccccgtgcga |
317 |
Q |
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| T |
7904674 |
ttgttattgcaagagagctgctctcatgcgcgaggcgcatgggttatgtgtttctaggggtttttgcttctgccatgtacgcgaggcacaccccgtgcga |
7904575 |
T |
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| Q |
318 |
ggaccatgacttgtataatgacctactcgctcaaaagaaaggtagttgttattctcattgtctcatactcacttcaatctcccactaacttaagcggtat |
417 |
Q |
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| T |
7904574 |
ggaccatgacttgtataatgacctactcgctcaaaagaaaggtagttgttattctcattgtctcatactcgcttcaatctcccactaacttaagc-gtat |
7904476 |
T |
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| Q |
418 |
gagtggttgc |
427 |
Q |
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| T |
7904475 |
gagtggttgc |
7904466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 426 - 746
Target Start/End: Complemental strand, 7904436 - 7904116
Alignment:
| Q |
426 |
gccgccctccatcgagcctcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
525 |
Q |
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| T |
7904436 |
gccgccctccatcgagcttcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
7904337 |
T |
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| Q |
526 |
tatattatgttcaatggagaaattctttacttcataaattcatttattatgtcctctcnnnnnnnnnnnnnnnncattaattatgtgaatagggtttcct |
625 |
Q |
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| T |
7904336 |
tatattatgttcaatggagaaattttttacttcataagttcatttattatgtcctctcaaaacaaaataaaaaacattaattatgtgaatagggtttcct |
7904237 |
T |
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| Q |
626 |
aatttccaactagtcaaaaaaggtgtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
725 |
Q |
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| T |
7904236 |
aatttccaactagtcaaaaaaggggtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
7904137 |
T |
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| Q |
726 |
agtattctaaaacatgatgat |
746 |
Q |
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||||||||||||||||||||| |
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| T |
7904136 |
agtattctaaaacatgatgat |
7904116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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