View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17027_low_5 (Length: 605)
Name: NF17027_low_5
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 97 - 586
Target Start/End: Complemental strand, 7585386 - 7584885
Alignment:
| Q |
97 |
tgaatattttcatgaataataaactataaattcatgatgaaatcaagaaatctatgttaaagtaataggaattggagatccataccatatcaatttcagc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7585386 |
tgaatattttcatgaataataaactataaattcatgatgaaatcaagaaatctatgttaaagtattaggaattggagatccataccatatcaatttcagc |
7585287 |
T |
|
| Q |
197 |
atcaatggtcatct-gac----------tcat-tgactcattgcaaacttgtacatcattcatgttgctggacatatttgattcatgaatatggagttct |
284 |
Q |
| |
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|||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7585286 |
atcaatggaagtagagacacgataatgatcatctgactcattgcaaacttgtacatcattcatgttgctggacatatttgattcatgaatatggagttct |
7585187 |
T |
|
| Q |
285 |
tcaagggataagtgccctcctagtcaatgtcacaaattacattaggaaaagaaaaccaagttacatgcatcttcaatgatgtgtgtttttctattttgtg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7585186 |
tcaagggataagtgccctcctagtcaatgtcacaaattacattaggaaaagaaaaccaagttacatgcatgttcaatgatgtgtgtttttctattttgtg |
7585087 |
T |
|
| Q |
385 |
tgtatcttgaagctattataagtatccatcattttttggcagaaagatcaaatgacattaatacactattaatataatgacaaatgataaaaccatttaa |
484 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7585086 |
tgtatcttgaagctattacaagtatccatcattttttggcagaaagatcaaatgacattaatacactattaatataatgacaaatgataaaaccatttaa |
7584987 |
T |
|
| Q |
485 |
atttaaatatttcttaattatgatatgccaatattcaatagttattgttttaaatagatgatannnnnnnacaaaaatcaatcacaaatgacacctgagc |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7584986 |
atttaaatatttcttaattatgatatgccaatattcaatagttattgttttaaatagatgatatttttttacaaaaatcaatcacaaatgacacctgagc |
7584887 |
T |
|
| Q |
585 |
at |
586 |
Q |
| |
|
|| |
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|
| T |
7584886 |
at |
7584885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 407
Target Start/End: Original strand, 7095904 - 7096037
Alignment:
| Q |
280 |
gttcttcaagggataagtgccctcctagtcaatgtcacaaattacattaggaaaagaaaaccaagttacatgcatcttcaatgatg-tgtgttt-----t |
373 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||| ||| |||||| ||||||| | |
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| T |
7095904 |
gttctccaagggataaatgccctcctagtcaatatcacaaataacattatgaaaagaaaaccaagttacacgcatgttctatgatgttgtgtttttttat |
7096003 |
T |
|
| Q |
374 |
tctattttgtgtgtatcttgaagctattataagt |
407 |
Q |
| |
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| |||||||||||| ||||||| ||||||||||| |
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|
| T |
7096004 |
tttattttgtgtgtgtcttgaatctattataagt |
7096037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 438 - 545
Target Start/End: Original strand, 7096130 - 7096235
Alignment:
| Q |
438 |
gacattaatacactattaatataatgacaaatgataaaaccatttaaatttaaatatttcttaattatgatatgccaatattcaatagttattg-tttta |
536 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| | ||| ||||| |
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| T |
7096130 |
gacattaatgcactattatta--atgacaaatgataaa-ccatttaaatttaaatatttcttaattatgatatgccgatgttcaatagcttttgttttta |
7096226 |
T |
|
| Q |
537 |
aatagatga |
545 |
Q |
| |
|
||||||||| |
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|
| T |
7096227 |
aatagatga |
7096235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7585444 - 7585392
Alignment:
| Q |
1 |
gacaacatcaccaattttggctattgatgtttcccttgattgaacttaaaata |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7585444 |
gacaacatcaccaattttggctattgatgtttcccttgattgaacttaaaata |
7585392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 7095759 - 7095801
Alignment:
| Q |
162 |
taggaattggagatccataccatatcaatttcagcatcaatgg |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||| |
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|
| T |
7095759 |
taggaattggagatctataccatatcaattccagcaccaatgg |
7095801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 227 - 385
Target Start/End: Complemental strand, 9624721 - 9624557
Alignment:
| Q |
227 |
gcaaacttgtacatcattcatgttgctggacatatttgattcatgaatatggagttct-----tc-aagggataagtgccctcctagtcaatgtcacaaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||| || ||||||||| |||| ||||||| ||| ||||||| |
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|
| T |
9624721 |
gcaaacttgtacatcattcatgttgctgtacatatttgattcttgatt--ggagttctcgaactcgaagggataaatgccttcctagtaaatatcacaaa |
9624624 |
T |
|
| Q |
321 |
ttacattaggaaaagaaaaccaagttacatgcatcttcaatgatg-tgtgt-ttttctattttgtgt |
385 |
Q |
| |
|
| ||||||| || ||||||||||||||| |||| |||||||||| ||||| ||||||||||||||| |
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|
| T |
9624623 |
taacattagataatgaaaaccaagttacaagcatgttcaatgatgttgtgtattttctattttgtgt |
9624557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 9624431 - 9624388
Alignment:
| Q |
415 |
attttttggcagaaagatcaaatgacattaatacactattaata |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9624431 |
attttttggcagaaagatcaaatgacattaatgcactattaata |
9624388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 545
Target Start/End: Complemental strand, 9623992 - 9623919
Alignment:
| Q |
474 |
aaaccatttaaatttaaata-tttcttaattatgatatgccaatattcaatagttattg-ttttaaatagatga |
545 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||||||||| |||||||||| ||| |||||||||||||| |
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|
| T |
9623992 |
aaaccatttaaatttatttaattttttaattatgatatgccaatgttcaatagtttttgtttttaaatagatga |
9623919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 227 - 385
Target Start/End: Original strand, 13612525 - 13612689
Alignment:
| Q |
227 |
gcaaacttgtacatcattcatgttgctggacatatttgattcatgaatatggagttct-----tc-aagggataagtgccctcctagtcaatgtcacaaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||| || ||||||||| |||| ||||||| ||| ||||||| |
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|
| T |
13612525 |
gcaaacttgtacatcattcatgttgctgtacatatttgattcttgatt--ggagttctcgaactcgaagggataaatgccttcctagtaaatatcacaaa |
13612622 |
T |
|
| Q |
321 |
ttacattaggaaaagaaaaccaagttacatgcatcttcaatgatg-tgtgt-ttttctattttgtgt |
385 |
Q |
| |
|
| ||||||| || ||||||||||||||| |||| |||||||||| ||||| ||||||||||||||| |
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|
| T |
13612623 |
taacattagataatgaaaaccaagttacaagcatgttcaatgatgttgtgtattttctattttgtgt |
13612689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 13612815 - 13612858
Alignment:
| Q |
415 |
attttttggcagaaagatcaaatgacattaatacactattaata |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13612815 |
attttttggcagaaagatcaaatgacattaatgcactattaata |
13612858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 545
Target Start/End: Original strand, 13613253 - 13613326
Alignment:
| Q |
474 |
aaaccatttaaatttaaata-tttcttaattatgatatgccaatattcaatagttattg-ttttaaatagatga |
545 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
13613253 |
aaaccatttaaatttatttaattttttaattatgatatgccaatgttcaatagtttttgtttttaaatagatga |
13613326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 20303048 - 20303003
Alignment:
| Q |
2 |
acaacatcaccaattttggctattgatgtttcccttgattgaactt |
47 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||| |||||| |
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|
| T |
20303048 |
acaacatcaccaattctggctattggtgtttcccctgatcgaactt |
20303003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 254 - 366
Target Start/End: Original strand, 17980045 - 17980154
Alignment:
| Q |
254 |
ggacatatttgattcatgaatatggagttcttcaagggataagtgccctcctagtcaatgtcacaaattacattaggaaaagaaaaccaagttacatgca |
353 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||||| |||| |||| ||||||||||||||| ||||||||||| |||| ||||||||||||| |
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|
| T |
17980045 |
ggacatatttgattcttgaat--ggagttctcaaagggataattgccgtcctggtcaatgtcacaaatagcattaggaaaa-aaaatcaagttacatgca |
17980141 |
T |
|
| Q |
354 |
tcttcaatgatgt |
366 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
17980142 |
tgttcaatgatgt |
17980154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 411 - 583
Target Start/End: Original strand, 17980251 - 17980422
Alignment:
| Q |
411 |
catcattttttggcagaaagatcaaatgacattaatacactattaatataatgacaaatgataaaaccatttaaatttaaatatttcttaattatgatat |
510 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| |||| |||| ||| || |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
17980251 |
catcattttttcgcagaaaaatcaaatgacaataatgcactttta---tactgacaaatgataaa-ccatttaaatttaaatatttcttaattatcatat |
17980346 |
T |
|
| Q |
511 |
gc-caatattcaatagttattgtttt-aaatagatga-tannnnnnnacaaaaatcaatcacaaatgacacctgag |
583 |
Q |
| |
|
|| ||| |||| || || ||||||| |||||||||| | ||||||||||| ||||||||||||||||| |
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|
| T |
17980347 |
gctgaattttcagtattttttgttttaaaatagatgattttttttttacaaaaatcaaccacaaatgacacctgag |
17980422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 29588532 - 29588617
Alignment:
| Q |
229 |
aaacttgtacatcattcatgttgctggacatatttgattcatgaatatggagttcttcaagggataagtgccctcctagtcaatgtca |
316 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| | | |||||||||| |||| || ||| |||||||| ||| ||||| |
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|
| T |
29588532 |
aaacttctgcatcattcatgttgctggacatatttgattcttca--atggagttctccaagagagtagttccctcctattcagtgtca |
29588617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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