View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_low_7 (Length: 509)
Name: NF17027_low_7
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 2840856 - 2841347
Alignment:
| Q |
17 |
caaaaaggcccttaattgcttttgtggtaccaccaaggaagaaaaatctttgtggctcatttttatgtcattcattctcaatatattttctagttaaaga |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2840856 |
caaaaaggcccttaattgcttttgtggtaacaccaaggaagaaaaatctttgtggctcatttttatgtcattcattctcaatatactttctagttaaaga |
2840955 |
T |
|
| Q |
117 |
gctcttgaatatgacaggtattcaaaggagacacaaggaagcatgatgatttggatccatctat----gtttgaggtaaactcttcaatgtaccttacaa |
212 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2840956 |
gctcttgaatatgacagggatgcaaaggagacacaaggaagcatgatgatttggatccatctatatatgtttgaggtaaactcttcaatgtaccttacaa |
2841055 |
T |
|
| Q |
213 |
atatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841056 |
atatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgttt |
2841155 |
T |
|
| Q |
313 |
ctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841156 |
ctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattca |
2841255 |
T |
|
| Q |
413 |
tgaaatttatctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattatctac |
504 |
Q |
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| T |
2841256 |
tgaaatttatctatgtatgtcagcttcccaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattagctac |
2841347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 2845543 - 2846034
Alignment:
| Q |
17 |
caaaaaggcccttaattgcttttgtggtaccaccaaggaagaaaaatctttgtggctcatttttatgtcattcattctcaatatattttctagttaaaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2845543 |
caaaaaggcccttaattgcttttgtggtaacaccaaggaagaaaaatctttgtggctcatttttatgtcattcattctcaatatactttctagttaaaga |
2845642 |
T |
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| Q |
117 |
gctcttgaatatgacaggtattcaaaggagacacaaggaagcatgatgatttggatccatctat----gtttgaggtaaactcttcaatgtaccttacaa |
212 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2845643 |
gctcttgaatatgacagggatgcaaaggagacacaaggaagcatgatgatttggatccatctatatatgtttgaggtaaactcttcaatgtaccttacaa |
2845742 |
T |
|
| Q |
213 |
atatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845743 |
atatataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgttt |
2845842 |
T |
|
| Q |
313 |
ctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattca |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845843 |
ctttgtctttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattca |
2845942 |
T |
|
| Q |
413 |
tgaaatttatctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattatctac |
504 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2845943 |
tgaaatttatctatgtatgtcagcttcccaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagtatagtattagctac |
2846034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 2832551 - 2832367
Alignment:
| Q |
17 |
caaaaaggcccttaattgcttttgtggtaccaccaaggaagaaaaatctttgtggctcatttttatgtcattcattctcaatatattttctagttaaaga |
116 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2832551 |
caaaaatgcccttaattgcctttgtggtaccaccaaggaagaaaaatcttcgtggctcatttttatgtcattcattctcaatatattttctagttaaaga |
2832452 |
T |
|
| Q |
117 |
gctcttgaatatgacaggtattcaaaggagacacaaggaagcatgatgatttggatccatctatgtttgaggtaaactcttcaat |
201 |
Q |
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| T |
2832451 |
gctcttgaatatgacaggtattcaaaggagacacaaggaagcatgatgatttggatccatctatgtttgaggtaaactcttcaat |
2832367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 321 - 472
Target Start/End: Complemental strand, 2788323 - 2788172
Alignment:
| Q |
321 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaattt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2788323 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcacaatgcttcttgaatgttaacccgtattcatgaaattt |
2788224 |
T |
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| Q |
421 |
atctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatt |
472 |
Q |
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||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
2788223 |
ttctatgtatttcagctttctaagactcctgaaagtgattaatagaattatt |
2788172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 321 - 491
Target Start/End: Complemental strand, 7363863 - 7363694
Alignment:
| Q |
321 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttcccttcttcataatgcttcttgaatgttaacccgtattcatgaaattt |
420 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
7363863 |
ttgataacaagttgaaatttttttgttctatcaccaagtagtttagtaatttcccttcttcacaatacttcttgaatgttaatccgtattcatgaaattt |
7363764 |
T |
|
| Q |
421 |
atctatgtatgtcagcttcctaagactcctaaaagtgattaatagaattatttgtcagcgaaataagagta |
491 |
Q |
| |
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|||||||||| | ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
7363763 |
atctatgtatttaagcttcctaagactcctgaaagtgatt-ataaaattatttgtcagcgaaataagagta |
7363694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 2832314 - 2832208
Alignment:
| Q |
217 |
ataatccatacttgtttcattagtattgtttttattttgattcatcatttcatccaaccaagagaatgtatggtaaattggtaataatttgtgtttcttt |
316 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2832314 |
ataatcgatacttgtttcattaatattgtttttattttgattcatcgttttctccagccaagagaatgtatggtaaattggtaataatttgtgtttcttt |
2832215 |
T |
|
| Q |
317 |
gtctttg |
323 |
Q |
| |
|
|||||| |
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|
| T |
2832214 |
ctctttg |
2832208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 2829578 - 2829526
Alignment:
| Q |
321 |
ttgataacaagtcgaaaaatctttgttctatcaccacgtagtttggtaatttc |
373 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2829578 |
ttgataacatgtcgaaaaatctttgttctatcaccacgtagtttggtaatttc |
2829526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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