View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17027_low_9 (Length: 410)
Name: NF17027_low_9
Description: NF17027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17027_low_9 |
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| [»] scaffold0155 (3 HSPs) |
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Alignment Details
Target: scaffold0155 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 37780 - 37666
Alignment:
| Q |
151 |
atccaacgatacactttatgaggaattgacagttggcacaccctctctcaagaaaatttatagaattggactaaaaagttttcaaaataccgaaattata |
250 |
Q |
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| T |
37780 |
atccaacgatacactttatgag-aattgacagttggcacaccctctctcaagaaaatttatagaattggactaaaaagttttcaaaataccgaaattaca |
37682 |
T |
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| Q |
251 |
tttatcaagttactgt |
266 |
Q |
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|||||||||||||||| |
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| T |
37681 |
tttatcaagttactgt |
37666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 37930 - 37836
Alignment:
| Q |
1 |
aacaaaaaattaacacctaaggtcttcatgatcttcatctttttatccatgtcaacaaacagtgtgatcaaaatgcaaacaaacattatgacatc |
95 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37930 |
aacaaaaaattaacacttatggtcttcatgatcttcatctttttatccatgtcaacaaatagtgtgatcaaaatgcaaacaaacattatgacatc |
37836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 37601 - 37542
Alignment:
| Q |
330 |
ggtataggatatttgtttaacattcattatttcnnnnnnnaaaaatctcaatgaacatta |
389 |
Q |
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| T |
37601 |
ggtataggatatttgtttcacattctttatttcttttttaaaaaatctcaatgaacatta |
37542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 2662540 - 2662428
Alignment:
| Q |
151 |
atccaacgatacactttatgaggaattgacagttggcacaccctctctcaagaaaatttatagaa-ttggactaaaaagttttcaaaataccgaaattat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2662540 |
atccaacgatacactttatgaggaattgacagttggcacaccctatctcaagaaaatttatagaatttggactaaaaagttttcaaaataccgaaattac |
2662441 |
T |
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| Q |
250 |
atttatcaagtta |
262 |
Q |
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| T |
2662440 |
atttatcaagtta |
2662428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2662690 - 2662596
Alignment:
| Q |
1 |
aacaaaaaattaacacctaaggtcttcatgatcttcatctttttatccatgtcaacaaacagtgtgatcaaaatgcaaacaaacattatgacatc |
95 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662690 |
aacaaaaaattaacacctatggtcttcatgatcttcatctttttatccatgtcaacaaacagtgtgatcaaaatgcaaacaaacattatgacatc |
2662596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 2662371 - 2662339
Alignment:
| Q |
330 |
ggtataggatatttgtttaacattcattatttc |
362 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
2662371 |
ggtataggatatttgtttcacattcattatttc |
2662339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 22361561 - 22361679
Alignment:
| Q |
148 |
tacatccaacgatacactttatgaggaattgacagttggcacaccctctctcaagaaaatttatagaattggactaaaaagttttcaaaataccgaaatt |
247 |
Q |
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|||||||| ||| ||||||||| |||| |||||||||| |||||||| | ||||||| | |||||||||||| |||||||||||| |||||| | |||| |
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| T |
22361561 |
tacatccagcgacacactttataaggacttgacagttgacacaccctatgtcaagaacttatatagaattggagtaaaaagttttccaaatactggaatt |
22361660 |
T |
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| Q |
248 |
atatttatcaagttactgt |
266 |
Q |
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| T |
22361661 |
acatttatcaagttactgt |
22361679 |
T |
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