View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17028_low_1 (Length: 794)
Name: NF17028_low_1
Description: NF17028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17028_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 264 - 779
Target Start/End: Complemental strand, 34986332 - 34985817
Alignment:
| Q |
264 |
catacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgtcgcaccaaaagcc |
363 |
Q |
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| T |
34986332 |
catacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgttgcaccaaaagcc |
34986233 |
T |
|
| Q |
364 |
aaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaaaacatcaaaa |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986232 |
aaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaaaacatcaaaa |
34986133 |
T |
|
| Q |
464 |
ctgaactattatactccagtttttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttccatcgggcattccttcaatcaaa |
563 |
Q |
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| T |
34986132 |
ctgaactattatactccattttttgtttataatcaaaactaaaagcagtatatgtatgtatcaaaccttggagtttccatcgggcattccttcaatcaaa |
34986033 |
T |
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| Q |
564 |
cagcctgaaggtctcttatgaaaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaattgtttgc |
663 |
Q |
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||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986032 |
cagccagaaggtcttttatgaaaattgttagaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaattgtttgc |
34985933 |
T |
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| Q |
664 |
tatatcttgcaaaaacacacttccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaatataaacaaaaggatgtaacattatg |
763 |
Q |
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| T |
34985932 |
tatatcttgcaaaaacacacttccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaatataaataaaaggatgtaacattatg |
34985833 |
T |
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| Q |
764 |
ttaattttgaaattct |
779 |
Q |
| |
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|||||||||||||||| |
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| T |
34985832 |
ttaattttgaaattct |
34985817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 34986581 - 34986371
Alignment:
| Q |
15 |
catagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttggtgttcattggtg |
114 |
Q |
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| T |
34986581 |
catagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttggtgttcattggtg |
34986482 |
T |
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| Q |
115 |
tcttctgtgaggattttcaagagtcaatggtcttagatgagtttgggaaacgattatgtttatcaaaatgatatttattatcttaaatattcctctactt |
214 |
Q |
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| T |
34986481 |
tcttctgtgaggattttcaagagtcaatggtcttagatgagtttgggaaacgattatgtttatcaaaatgatatttattatcttaaatattcctctactt |
34986382 |
T |
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| Q |
215 |
ttaagttatcc |
225 |
Q |
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||||||||||| |
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| T |
34986381 |
ttaagttatcc |
34986371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 266 - 739
Target Start/End: Complemental strand, 34994705 - 34994221
Alignment:
| Q |
266 |
tacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgtcgcaccaaaagccaa |
365 |
Q |
| |
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|||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||| |
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| T |
34994705 |
tacctcgagcatctgcaataagttttgttgcattcagtgtttcagaccactcaatgtgctggacaatggaagcaagccagcgtggcgcaccaaaagccaa |
34994606 |
T |
|
| Q |
366 |
agctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaatta--aaacatcaaaa |
463 |
Q |
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| | |||||||| |||| | |||||||| || |||||| ||||| ||||||| | || ||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
34994605 |
accagaggtaacaaatgtcttaaaaagaccattcaattgactatggtctgctactacatgctccacccatataacctaatgtaattataaaacatcaaac |
34994506 |
T |
|
| Q |
464 |
ctgaactattatac---------tccagtt--tttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttccatcgggcattc |
552 |
Q |
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| || ||| ||| || | | |||| |||||| |||| |||| |||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
34994505 |
c--aaatataatatgtgaaattatcaatatggtttgcttataaagaaaattaaagggagtatatgtatgtaaagaaccttggagtttccattgggcattc |
34994408 |
T |
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| Q |
553 |
cttcaatcaaacagcctgaaggtctcttatgaaaattgtttgaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagt |
652 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34994407 |
ctataatcaaacagcctgaaggtcttttatgaaaattgtttgagaaagaaggtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagt |
34994308 |
T |
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| Q |
653 |
gaattgtttgctatatcttgcaaaaacacacttccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaata |
739 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||||||||| |||||| || |||| |||||||||||||||||||||||| |
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| T |
34994307 |
aaattgtttgctatatcttgcaaacacacactcccgagttggtataaaaggactaggcaaataaaattctgcactcatctgcaaata |
34994221 |
T |
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