View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17028_low_2 (Length: 556)
Name: NF17028_low_2
Description: NF17028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17028_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 264 - 541
Target Start/End: Complemental strand, 34986332 - 34986055
Alignment:
| Q |
264 |
catacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgtcgcaccaaaagcc |
363 |
Q |
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| T |
34986332 |
catacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgttgcaccaaaagcc |
34986233 |
T |
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| Q |
364 |
aaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaaaacatcaaaa |
463 |
Q |
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| T |
34986232 |
aaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaaaacatcaaaa |
34986133 |
T |
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| Q |
464 |
ctgaactattatactccagtttttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttcc |
541 |
Q |
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| T |
34986132 |
ctgaactattatactccattttttgtttataatcaaaactaaaagcagtatatgtatgtatcaaaccttggagtttcc |
34986055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 34986581 - 34986371
Alignment:
| Q |
15 |
catagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttggtgttcattggtg |
114 |
Q |
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| T |
34986581 |
catagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttggtgttcattggtg |
34986482 |
T |
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| Q |
115 |
tcttctgtgaggattttcaagagtcaatggtcttagatgagtttgggaaacgattatgtttatcaaaatgatatttattatcttaaatattcctctactt |
214 |
Q |
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| T |
34986481 |
tcttctgtgaggattttcaagagtcaatggtcttagatgagtttgggaaacgattatgtttatcaaaatgatatttattatcttaaatattcctctactt |
34986382 |
T |
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| Q |
215 |
ttaagttatcc |
225 |
Q |
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| T |
34986381 |
ttaagttatcc |
34986371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 266 - 462
Target Start/End: Complemental strand, 34994705 - 34994507
Alignment:
| Q |
266 |
tacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgtcgcaccaaaagccaa |
365 |
Q |
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| T |
34994705 |
tacctcgagcatctgcaataagttttgttgcattcagtgtttcagaccactcaatgtgctggacaatggaagcaagccagcgtggcgcaccaaaagccaa |
34994606 |
T |
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| Q |
366 |
agctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaat--taaaacatcaaa |
462 |
Q |
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| T |
34994605 |
accagaggtaacaaatgtcttaaaaagaccattcaattgactatggtctgctactacatgctccacccatataacctaatgtaattataaaacatcaaa |
34994507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 34994475 - 34994419
Alignment:
| Q |
485 |
tttgtttataatcaaaactaaaaggagtatatgtatgtatcgaaccttggagtttcc |
541 |
Q |
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| T |
34994475 |
tttgcttataaagaaaattaaagggagtatatgtatgtaaagaaccttggagtttcc |
34994419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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