View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17028_low_3 (Length: 327)
Name: NF17028_low_3
Description: NF17028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17028_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 123 - 308
Target Start/End: Original strand, 38391053 - 38391238
Alignment:
| Q |
123 |
taccagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagata |
222 |
Q |
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| T |
38391053 |
taccagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagata |
38391152 |
T |
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| Q |
223 |
atatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagt |
308 |
Q |
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| T |
38391153 |
atatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagt |
38391238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 38389931 - 38389835
Alignment:
| Q |
212 |
gtatcaagataatatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagt |
308 |
Q |
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| T |
38389931 |
gtatcaagagaatacatactcatgaagcgcaattcattttactatatcttctaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagt |
38389835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 94 - 268
Target Start/End: Complemental strand, 39623982 - 39623809
Alignment:
| Q |
94 |
gttgggataacccttgctaataaacttgctac-cagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtggg |
192 |
Q |
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| T |
39623982 |
gttgggaaaagccttgctaatgaacttgctactcaatttgacaagtctaaaagccatccagctgctttgacaacaaacaagtatggaattggaaagttgg |
39623883 |
T |
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| Q |
193 |
aatcgttcaaaccatgtgtgtatcaagataatatatactcatgaagcacaattcattttactatatcttcaaactt |
268 |
Q |
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| T |
39623882 |
aattattcaaagcttgcttg--tcaagagactatttactcatgaagcgcaattcatctcactatatcttcaaactt |
39623809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 38391001 - 38391051
Alignment:
| Q |
17 |
aatattgggcggaaaatgaaaaaccttataggattctaacgcctagacagt |
67 |
Q |
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| T |
38391001 |
aatattgggcggaaaatgaaaaaccttataggattctaacgcctagacagt |
38391051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 281
Target Start/End: Complemental strand, 39591189 - 39591048
Alignment:
| Q |
138 |
tctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagataatatatactcatgaa |
237 |
Q |
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| T |
39591189 |
tctaaaagtcacccagcagctttgacaaccaacaagtatggaattggaaactgggaattattcaaagc--ttgcttatcaagagaatacttactcatgaa |
39591092 |
T |
|
| Q |
238 |
gcacaattcattttactatatcttcaaactttgtcatgtaggtt |
281 |
Q |
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| T |
39591091 |
acgcaattcgtttttatatatcttcaaactttgccaggtaggtt |
39591048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 38389653 - 38389776
Alignment:
| Q |
21 |
ttgggcggaaaatgaaaaaccttataggattctaacgcctagacagtatgcagaggcatttcagctgaccgaagttgggataacccttgctaataaactt |
120 |
Q |
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||||||||||||||||||| |||||||| | | || |||| | ||| ||||||||||||| |||| || || ||||| |||| | |||||||| || || |
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| T |
38389653 |
ttgggcggaaaatgaaaaatcttataggtatgtgacacctaaagagtttgcagaggcattttagcttactgatgttggaataagctttgctaatgaattt |
38389752 |
T |
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| Q |
121 |
gctacc-agttagaaaaatctaaa |
143 |
Q |
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| T |
38389753 |
gctacctagttagaaaaatctaaa |
38389776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 38390114 - 38389958
Alignment:
| Q |
17 |
aatattgggcggaaaatgaaaaaccttataggattctaacgcctagacagtatgcagaggca-tttcagctgaccgaagttgggataacccttgctaata |
115 |
Q |
| |
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||||||| |||| ||||||||||||||||| | || | || |||||| ||| ||| || ||| ||||| || || || |||||||||| |||| || || |
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| T |
38390114 |
aatattgagcggtaaatgaaaaaccttatatgtttttgacacctagagagtttgc-gatgcaatttcaactcactgatgttgggataagccttcctgtta |
38390016 |
T |
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| Q |
116 |
aacttgctacc-----agttagaaaaatctaaacgccacccagctgccttggcaaccaa |
169 |
Q |
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| T |
38390015 |
aacttgctacctagctagtaagaaaaatctaaaa-ccacccagctgccttggcaaccaa |
38389958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 39577024 - 39576914
Alignment:
| Q |
94 |
gttgggataacccttgctaataaacttgctac-cagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtggg |
192 |
Q |
| |
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||||||| || ||||| |||| |||||| ||| || || || || |||||| |||| |||||||| ||| | ||||||||||||||||||||||| ||| |
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| T |
39577024 |
gttgggagaagccttggtaatgaacttgttactcaatttgacaagtctaaaagccatccagctgctttgacgaccaacaagtatggaattggaaaacggg |
39576925 |
T |
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| Q |
193 |
aatcgttcaaa |
203 |
Q |
| |
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| T |
39576924 |
aattgttcaaa |
39576914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 39541091 - 39540974
Alignment:
| Q |
145 |
gccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagataatatatactcatgaagcacaat |
244 |
Q |
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| T |
39541091 |
gccacccagctgccttgacaaccaagaaatatggagttggaaaatgggaactttttaaagc--ttgtttatcaagagaatatttacttatgaagcgcaac |
39540994 |
T |
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| Q |
245 |
tcattttactatatcttcaa |
264 |
Q |
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|||||| |||||||||||| |
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| T |
39540993 |
tcatttgtctatatcttcaa |
39540974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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