View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17028_low_4 (Length: 246)
Name: NF17028_low_4
Description: NF17028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17028_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37651966 - 37652195
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37651966 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37652065 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37652066 |
acttgaaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37652165 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgt |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
37652166 |
atgtgaaaagcaatggttcatcaaggttgt |
37652195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37640767 - 37640996
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37640767 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37640866 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
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| T |
37640867 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccaggggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37640966 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgt |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
37640967 |
atgtgaaaagcaatggttcatcaaggttgt |
37640996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37634939 - 37635168
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37634939 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37635038 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
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||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37635039 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37635138 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgt |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
37635139 |
atgtgaaaagcaatggttcatcaaggttgt |
37635168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37637853 - 37638082
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37637853 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37637952 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
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||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37637953 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37638052 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
37638053 |
atgtgaaaagcaatggttcatcaaggttgt |
37638082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37646141 - 37646370
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37646141 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37646240 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37646241 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37646340 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37646341 |
atgtgaaaagcaatggttcatcaaggttgt |
37646370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37649054 - 37649283
Alignment:
| Q |
1 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagaccggtggtagggtagtaaaagtaacttccaatctgatccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37649054 |
gatcaacagacgactgaagattctaagaccaccgaaaccaccaacggctctttgaagacctgtggtagggtagtaaaagtaacttccaatttgatccttc |
37649153 |
T |
|
| Q |
101 |
acttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaagggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
200 |
Q |
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||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37649154 |
acttggaatttgtaggtatagttagtcccaggaagaatggggcattgaacaccagcggtaccatcttgccatgaattcttcctctgttgaacaccgtgcc |
37649253 |
T |
|
| Q |
201 |
atgtgaaaagcaatggttcatcaaggttgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
37649254 |
atgtgaaaagcaatggttcatcaaggttgt |
37649283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 32388331 - 32388505
Alignment:
| Q |
56 |
agaccggtggtagggtagtaaaagtaacttccaatctgatccttcacttggaatttgtaggtgtagttagttccaggaagaatagggcattgaacaccaa |
155 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||| || |||||| ||||| || || |
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| T |
32388331 |
agaccggtagtagggtagtaaaagtaactaccaatttgatccttaacctggaatttgtaggtgtagttggttcccggggcaataggacattggactcccg |
32388430 |
T |
|
| Q |
156 |
gggtaccatcttgccatgaattcttcctctgttgaacaccgtgccatgtgaaaagcaatggttcatcaaggttgt |
230 |
Q |
| |
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|| ||||| ||| || || ||||| ||||||| |||| |||||||||||| | ||| ||||||||||||| |
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| T |
32388431 |
atgttccatcggcccacgagtttttcctttgttgaataccgctccatgtgaaaaggagtggctcatcaaggttgt |
32388505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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