View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17029_high_1 (Length: 261)
Name: NF17029_high_1
Description: NF17029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17029_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 37347335 - 37347596
Alignment:
| Q |
1 |
tcaaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttcattatgtcaagaatgctcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37347335 |
tcaaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttcattatgtcaagaatgctcgt |
37347434 |
T |
|
| Q |
101 |
ggtgttgcaaatcctaacatgggttttgcttgtcaacttttgcagtgtcagaaaagagtggtaaatgttaatt------------caaatgttaatgcta |
188 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37347435 |
ggtgttacaaatcctaacatgggttttgcttgtcaacttttgcagtgtcagaaaagagtggtaaatgttaattcaaatgctaatgcaaatgttaatgcta |
37347534 |
T |
|
| Q |
189 |
tgccttcaagtcctaattctgttcttaggatgtttagaatggcacctcattcacctgatgat |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37347535 |
tgccttcaagtcctaattctgttcttaggatgtttagaatggcacctcattcaccttatgat |
37347596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 24153400 - 24153659
Alignment:
| Q |
2 |
caaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttca---------ttatgtcaaga |
92 |
Q |
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||||||||||||| ||||| |||||| || ||||||||||| ||||||||| ||||||| | | |||||||||||||||| |||||| |||| |
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| T |
24153400 |
caaggtgtttctaaatcaaactcttttgtcattgcttatctcatgtggagaaaaggacagacccttgaagatgcttttcaatttcaatattatgtgaaga |
24153499 |
T |
|
| Q |
93 |
atgctcgtggtgttgcaaatcctaacatgggttttgcttgtcaacttttgcagtgtcagaaaagagtggtaaatgttaatt------caaatgttaatgc |
186 |
Q |
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| T |
24153500 |
atgcttgcgcta---caaatcctaacatgggttt-gcttgtcaacttttacagtgttagaaaagagtagtaaatgtaaattgaagtgcaaatgctaatgc |
24153595 |
T |
|
| Q |
187 |
tatgccttcaagtcctaattctgttcttaggatgtt-tagaatggcacctcattcacctgatga |
249 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||| |||| |
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| T |
24153596 |
tatgccttcaagtcctaattatgttcttcggatgttatagaatggctcctcattcaccttatga |
24153659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 24904335 - 24904384
Alignment:
| Q |
165 |
atgttaattcaaatgttaatgctatgccttcaagtcctaattctgttctt |
214 |
Q |
| |
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|||| |||| |||||||||| ||||||||||||||||||||| ||||||| |
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| T |
24904335 |
atgtaaatttaaatgttaatactatgccttcaagtcctaattatgttctt |
24904384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 26670922 - 26671176
Alignment:
| Q |
2 |
caaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttca---------ttatgtcaaga |
92 |
Q |
| |
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|||||| ||||||||||||||||||| || ||||||||||| ||| |||| ||||||||| ||||||||||||||||| |||||| |||| |
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| T |
26670922 |
caaggtatttctagatcaacctcttttgtcattgcttatctc-tgtagagaaaaggacaaatatttgaagatgcttttcaatttcaatattatgtgaaga |
26671020 |
T |
|
| Q |
93 |
atgctcgtggtgttgcaaatcctaacatgggttttgcttgtcaacttttgc-agtgtcagaaaagagtggtaaatgttaatt------caaatgttaatg |
185 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||||||||| |||| | |||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
26671021 |
atgctcgtg---ttacaaatcctaacatggattttgcttgtcaaattttacaagtgtcagaaaagagttgtaaatgtaaattcaaatgcaaatgttaatg |
26671117 |
T |
|
| Q |
186 |
ctatgccttcaagtcctaattctgttcttaggatgtt-tagaatggcacctcattcacct |
244 |
Q |
| |
|
||| |||||||||||||| || ||||||| ||||||| || |||||| |||||||||||| |
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| T |
26671118 |
cta-gccttcaagtcctatttatgttcttgggatgttataaaatggctcctcattcacct |
26671176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 26673450 - 26673704
Alignment:
| Q |
2 |
caaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttca---------ttatgtcaaga |
92 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||||||||| ||| |||| ||||||||| ||||||||||||||||| |||||| |||| |
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| T |
26673450 |
caaggtatttctagatcaacctcttttgtcattgcttatctc-tgtagagaaaaggacaaatatttgaagatgcttttcaatttcaatattatgtgaaga |
26673548 |
T |
|
| Q |
93 |
atgctcgtggtgttgcaaatcctaacatgggttttgcttgtcaacttttgc-agtgtcagaaaagagtggtaaatgttaatt------caaatgttaatg |
185 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||||||||| |||| | ||||| |||||||||| |||||||| |||| |||||||||||| |
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| T |
26673549 |
atgctcgtg---ttacaaatcctaacatggattttgcttgtcaaattttacaagtgttagaaaagagttgtaaatgtaaattcaaatgcaaatgttaatg |
26673645 |
T |
|
| Q |
186 |
ctatgccttcaagtcctaattctgttcttaggatgtt-tagaatggcacctcattcacct |
244 |
Q |
| |
|
||| |||||||||||||| || ||||||| ||||||| || |||||| |||||||||||| |
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| T |
26673646 |
cta-gccttcaagtcctatttatgttcttgggatgttataaaatggcccctcattcacct |
26673704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 1300267 - 1300521
Alignment:
| Q |
2 |
caaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttca---------ttatgtcaaga |
92 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||||||||| ||| |||| ||||||||| ||||||||||||||||| |||||| |||| |
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| T |
1300267 |
caaggtatttctagatcaacctcttttgtcattgcttatctc-tgtagagaaaaggacaaatatttgaagatgcttttcaatttcaatattatgtgaaga |
1300365 |
T |
|
| Q |
93 |
atgctcgtggtgttgcaaatcctaacatgggttttgcttgtcaacttttgc-agtgtcagaaaagagtggtaaatgttaatt------caaatgttaatg |
185 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||||||||| |||| | ||||| |||||||||| |||||||| |||| |||||||||||| |
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| T |
1300366 |
atgctcgtg---ttacaaatcctaacatggattttgcttgtcaaattttacaagtgttagaaaagagttgtaaatgtaaattcaaatgcaaatgttaatg |
1300462 |
T |
|
| Q |
186 |
ctatgccttcaagtcctaattctgttcttaggatgtt-tagaatggcacctcattcacct |
244 |
Q |
| |
|
||| |||||||||||||| || ||||||| ||||||| || |||||| |||||||||||| |
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|
| T |
1300463 |
cta-gccttcaagtcctatttatgttcttgggatgttataaaatggcccctcattcacct |
1300521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 39220164 - 39220317
Alignment:
| Q |
1 |
tcaaggtgtttctagatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttcattatgtcaagaatgctcgt |
100 |
Q |
| |
|
|||||| ||||| ||||||| ||||||| || |||||||| |||||||| | ||||| |||||||||||||||||||| | ||| || | ||| | |
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|
| T |
39220164 |
tcaaggggtttcgcgatcaacggctttggtgatagcttatctcatgtggaggaagggacagagctttgaagatgcttttcagtttgttaaaactgcaagg |
39220263 |
T |
|
| Q |
101 |
ggtgttgcaaatcctaacatgggttttgcttgtcaacttttgcagtgtcagaaa |
154 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
39220264 |
ggagtcacaaatccaaacatgggttttgcttgtcaactcttgcagtgtcagaaa |
39220317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 45146469 - 45146402
Alignment:
| Q |
14 |
agatcaacctctttggttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttca |
81 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| ||||||| |||||| | ||||||||||| |
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|
| T |
45146469 |
agatcaacctcttttgtcattgcttatcttatgtggagaaaaggacagagctttaaggatgcttttca |
45146402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 45146351 - 45146248
Alignment:
| Q |
143 |
cagtgtcagaaaagagtggtaaatgttaatt------caaatgttaatgctatgccttcaagtcctaattctgttcttaggatgtt-tagaatggcacct |
235 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||| ||| | |||||||||||||||||||| |||||| |||||||| ||||||||| ||| |
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|
| T |
45146351 |
cagtgtcagaaaagagtagtaaatgtaaatttaagtgcaaatgctaaagttatgccttcaagtcctaattatgttctcaggatgttatagaatggctcct |
45146252 |
T |
|
| Q |
236 |
catt |
239 |
Q |
| |
|
|||| |
|
|
| T |
45146251 |
catt |
45146248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 39220325 - 39220379
Alignment:
| Q |
183 |
atgctatgccttcaagtcctaattctgttcttaggatgtttagaatggcacctca |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||| | ||||||| ||||| |
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|
| T |
39220325 |
atgctatgcctgcaagtcctaattctgttttaaggatgtatcgaatggctcctca |
39220379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 7599313 - 7599365
Alignment:
| Q |
29 |
gttattgcttatcttatgtggagagaaggacaaagctttgaagatgcttttca |
81 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
7599313 |
gttattgcttatcttatgtggagggaaggacagagttttgatgatgcttttca |
7599365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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