View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703-Insertion-2 (Length: 769)
Name: NF1703-Insertion-2
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 8 - 769
Target Start/End: Complemental strand, 33633410 - 33632649
Alignment:
| Q |
8 |
gtggactgcaattttgaactaaaatgtgaggactgatttaactgaagaagttctattgtgttggagcaactcatatttttgaatgaacaacttaactata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33633410 |
gtggactgcaattttgaactaaaatgtgaggactgatttaactgaagaagttctattgtgttggagcaactcatatttttgaatgaccaacttaactata |
33633311 |
T |
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| Q |
108 |
tttactatattttaacgtgacttaagaagttagtccattgaattcgttcgttagagtacttttttgctttggatttcatagcaatatgttaggtatttgt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33633310 |
tttactatattttaacgtgacttaagaagttagtccattgaattcgttcgttagagtacttttttgctttggacttcatagcaatatgttaggtatttgt |
33633211 |
T |
|
| Q |
208 |
ctttctaactttatctgttcatgcatttgattttggtaattgctattccatcacgacttttaacaatacagtgttgattcgtgcatttgttaatgtaatt |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33633210 |
ctttctaactttatccgttcatgcatttgattttggtaattgctattccatcgcgacttgtaacaatacagtgttgattcgtgcatttgttaatgtaatt |
33633111 |
T |
|
| Q |
308 |
ttgagcgaacgtaataacagtgttgttagggtgaggcatgattaatttattaagcgaacaataaatttagtcgcacacagacactaccttgttcagacat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33633110 |
ttgagcgaacgtaataacagtgttgttagggtgaggcatgattaatttattaagcgaacaataaatttagttgcacacagacactaccttgttcagacat |
33633011 |
T |
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| Q |
408 |
agtatgataattgcgatgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgcttt |
507 |
Q |
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| T |
33633010 |
agtatgataattgtgatgctactttttcttttttgcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgcttt |
33632911 |
T |
|
| Q |
508 |
gaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaaccaggggttgcaatttcttcacttataaaaccatagtatttgcttgtt |
607 |
Q |
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| T |
33632910 |
gaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaacaaggggttgcaatttcttcacttataaaaccatagtatttgcttgtt |
33632811 |
T |
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| Q |
608 |
gattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtca |
707 |
Q |
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| T |
33632810 |
gattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtca |
33632711 |
T |
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| Q |
708 |
gaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttaga |
769 |
Q |
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| T |
33632710 |
gaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtaattggttaga |
33632649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 249 - 750
Target Start/End: Original strand, 29192793 - 29193282
Alignment:
| Q |
249 |
gctattccatcacgacttttaacaatacagtgttgattcgtgcatttgttaatgtaattttgagcgaacgtaataacagtgttgttagggtgaggcatga |
348 |
Q |
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||||||||||| || || ||||||||||||||||||| || | ||||||||||| ||| |||| |||||||||||| | |||||| || |||| |
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| T |
29192793 |
gctattccatcgtgatttgtaacaatacagtgttgatttgt-cgtttgttaatgt-----tgaatgaacataataacagtgtcgctagggtaagacatgg |
29192886 |
T |
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| Q |
349 |
ttaatttattaagcgaacaataaatttagtcgcacacagacactaccttgttcagacatagtatgataattgcgatgctactttttctttttggcagatt |
448 |
Q |
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| T |
29192887 |
ttaatttattaagtgaacaataaatctagtcgcacacagacactgccttattcagacatattatgataattgtgatgctactttt-ctttttggcagatt |
29192985 |
T |
|
| Q |
449 |
caaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagtaa--taaatcacaact |
546 |
Q |
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| T |
29192986 |
caaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaact |
29193085 |
T |
|
| Q |
547 |
aaaaactatagaaccaggggttgcaatttcttcacttataaaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaa |
646 |
Q |
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| T |
29193086 |
aaaa----tagaaccagcggttgcacttgc---acttataaaaccatagtctttgcttgttgattttttctgattgtgttccttcccaggagatcctgaa |
29193178 |
T |
|
| Q |
647 |
agataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaa |
746 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29193179 |
agatgacaaggagccggaacctttaaatattgactttggttcagaaatttcgtctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaa |
29193278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 29192539 - 29192763
Alignment:
| Q |
11 |
gactgcaattttgaactaaaatgtgaggactgatttaactgaagaagttctattgtgttggagcaactcatatttttgaatgaacaacttaactatattt |
110 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| || ||||| ||||||| |
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| T |
29192539 |
gactgcaattttgaactaaaatgttaggactgatttaactgaaggagttctattgcgttcgagcaactcatatttttgaaggatcaact----tatattt |
29192634 |
T |
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| Q |
111 |
actatattttaacgtgacttaagaagttagtccattgaattcgttcgttagagtacttttttgctttggatttcatagcaatatgttaggtatttgtctt |
210 |
Q |
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|||| ||||||| ||||||| | ||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||| ||| ||| |
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| T |
29192635 |
actagattttaatgtgacttgaaaagttagtccattgaattcgttcttttgagtacttttttgtagtggatttcatagca--atgttaggtaattgcctt |
29192732 |
T |
|
| Q |
211 |
tctaactttatctgttcatgcatttgatttt |
241 |
Q |
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|||||||||||||||||||| || ||||||| |
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| T |
29192733 |
tctaactttatctgttcatgtatatgatttt |
29192763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 452 - 615
Target Start/End: Original strand, 29182893 - 29183063
Alignment:
| Q |
452 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagt--aataaatcacaactaaa |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
29182893 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaa |
29182992 |
T |
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| Q |
550 |
aactatagaaccaggggttgcaatttc---------ttcacttataaaaccatagtatttgcttgttgatttttt |
615 |
Q |
| |
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|||||||||| ||||||| || | | |||||||||||||||||| |||||||||||||||||| |
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| T |
29182993 |
----atagaaccagcggttgcacttgcacttgcacttgcacttataaaaccatagtctttgcttgttgatttttt |
29183063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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