View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1703-Insertion-4 (Length: 188)

Name: NF1703-Insertion-4
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1703-Insertion-4
NF1703-Insertion-4
[»] chr4 (7 HSPs)
chr4 (22-150)||(14173955-14174083)
chr4 (22-150)||(14178709-14178837)
chr4 (22-150)||(28607025-28607153)
chr4 (22-150)||(28611787-28611915)
chr4 (22-150)||(44161604-44161732)
chr4 (22-150)||(11104487-11104615)
chr4 (66-150)||(48826916-48827000)
[»] chr8 (2 HSPs)
chr8 (22-150)||(12930694-12930822)
chr8 (22-150)||(12935440-12935568)
[»] chr1 (1 HSPs)
chr1 (22-150)||(34907157-34907285)
[»] chr7 (4 HSPs)
chr7 (22-150)||(37040645-37040773)
chr7 (22-150)||(15290250-15290374)
chr7 (45-150)||(12082055-12082160)
chr7 (65-150)||(12099060-12099145)
[»] chr5 (2 HSPs)
chr5 (22-148)||(42911210-42911336)
chr5 (22-150)||(29107094-29107222)
[»] chr3 (1 HSPs)
chr3 (24-149)||(51302181-51302306)
[»] chr2 (1 HSPs)
chr2 (22-140)||(8539201-8539318)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 14173955 - 14174083
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14173955 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtagg 14174054  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  14174055 tctcacgggaaacactatattgtatctct 14174083  T

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Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 14178709 - 14178837
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14178709 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtagg 14178808  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  14178809 tctcacgggaaacactatattgtatctct 14178837  T

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Target: chr4; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 28607153 - 28607025
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28607153 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtagg 28607054  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  28607053 tctcacgggaaacactatattgtatctct 28607025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 28611915 - 28611787
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28611915 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtagg 28611816  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  28611815 tctcacgggaaacactatattgtatctct 28611787  T

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Target: chr4; HSP #5
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 44161604 - 44161732
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44161604 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtagg 44161703  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    ||| |||||||||||||||||||||||||    
T  44161704 tcttacgggaaacactatattgtatctct 44161732  T

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Target: chr4; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 11104487 - 11104615
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||    
T  11104487 tgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtggg 11104586  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  11104587 tctcacgggaaacactatattgtatctct 11104615  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 48827000 - 48826916
Alignment:
Q  66 tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||| |||   |||||||||||||||||||||||||||||    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctct 48826916  T

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Target: chr8 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 12930694 - 12930822
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  12930694 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtagg 12930793  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  12930794 tctcacgggaaacactatattgtatctct 12930822  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 12935440 - 12935568
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  12935440 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtagg 12935539  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  12935540 tctcacgggaaacactatattgtatctct 12935568  T

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Target: chr1 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 34907157 - 34907285
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  34907157 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtagg 34907256  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||||||||||||||    
T  34907257 tctcacgggaaacactatattgtatctct 34907285  T

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Target: chr7 (Bit Score: 117; Significance: 8e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 37040773 - 37040645
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37040773 tgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtagg 37040674  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||||| ||||||||||||||||||||    
T  37040673 tctcacggaaaacactatattgtatctct 37040645  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 15290250 - 15290374
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  | | ||||||||||| |||||| ||| ||    
T  15290250 tgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgc--tgaaataatagcattcgaataggagtggg 15290346  T
Q  122 tctcacgggaaacactatattgtatctct 150  Q
    |||||| ||||||||||||||||||||||    
T  15290347 tctcac-ggaaacactatattgtatctct 15290374  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 12082055 - 12082160
Alignment:
Q  45 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 144  Q
    |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| ||   ||||||   |||||||||||||||    
T  12082055 gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgt 12082154  T
Q  145 atctct 150  Q
    ||||||    
T  12082155 atctct 12082160  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 12099060 - 12099145
Alignment:
Q  65 gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctct 150  Q
    |||||||||||||||||| |||||| ||||| |||||| |||| |||||| |||  |||||||  ||||||| ||||||| |||||    
T  12099060 gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctct 12099145  T

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Target: chr5 (Bit Score: 107; Significance: 7e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 7e-54
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 42911336 - 42911210
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  42911336 tgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtagg 42911237  T
Q  122 tctcacgggaaacactatattgtatct 148  Q
    ||||| |||||||||||||||||||||    
T  42911236 tctcaagggaaacactatattgtatct 42911210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 29107222 - 29107094
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtag 120  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||    
T  29107222 tgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtag 29107123  T
Q  121 gtctcacgggaaacactatattgtatctct 150  Q
    ||||||||||||||||||| ||||||||||    
T  29107122 gtctcacgggaaacactat-ttgtatctct 29107094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 51302181 - 51302306
Alignment:
Q  24 ttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtc 123  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| ||||    
T  51302181 ttgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtc 51302280  T
Q  124 tcacgggaaacactatattgtatctc 149  Q
    ||||||||||||||||||||||||||    
T  51302281 tcacgggaaacactatattgtatctc 51302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 5e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 8539201 - 8539318
Alignment:
Q  22 tgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtagg 121  Q
    |||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| ||    
T  8539201 tgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtggg 8539300  T
Q  122 tctcacgggaaacactata 140  Q
    |||||| ||||||||||||    
T  8539301 tctcac-ggaaacactata 8539318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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