View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1703-Insertion-5 (Length: 54)

Name: NF1703-Insertion-5
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1703-Insertion-5
NF1703-Insertion-5
[»] chr2 (12 HSPs)
chr2 (8-54)||(39338569-39338615)
chr2 (8-54)||(41877260-41877306)
chr2 (16-54)||(387511-387549)
chr2 (18-54)||(5254590-5254626)
chr2 (15-51)||(14106233-14106269)
chr2 (14-54)||(14405532-14405572)
chr2 (15-54)||(7874610-7874649)
chr2 (19-54)||(14436975-14437010)
chr2 (8-54)||(10524425-10524471)
chr2 (18-54)||(43816155-43816191)
chr2 (16-43)||(15457278-15457305)
chr2 (15-54)||(17116596-17116635)
[»] scaffold0085 (1 HSPs)
scaffold0085 (8-54)||(48662-48708)
[»] chr7 (14 HSPs)
chr7 (8-54)||(5859991-5860037)
chr7 (8-54)||(31971843-31971889)
chr7 (8-54)||(38306587-38306633)
chr7 (8-54)||(10244507-10244553)
chr7 (8-50)||(41089455-41089497)
chr7 (8-54)||(44353272-44353318)
chr7 (8-54)||(47325593-47325639)
chr7 (9-54)||(42454442-42454487)
chr7 (8-52)||(25161135-25161179)
chr7 (15-54)||(6585220-6585259)
chr7 (8-54)||(33434539-33434585)
chr7 (8-40)||(40726227-40726259)
chr7 (14-54)||(48161748-48161788)
chr7 (19-54)||(3867453-3867488)
[»] chr5 (7 HSPs)
chr5 (8-54)||(7452915-7452961)
chr5 (8-54)||(698694-698740)
chr5 (8-54)||(29087805-29087851)
chr5 (8-54)||(34378426-34378472)
chr5 (8-49)||(18593569-18593610)
chr5 (16-51)||(41250904-41250939)
chr5 (8-54)||(5656801-5656847)
[»] chr3 (18 HSPs)
chr3 (8-54)||(2392211-2392257)
chr3 (8-54)||(2393974-2394020)
chr3 (8-54)||(45164180-45164226)
chr3 (8-54)||(17551284-17551330)
chr3 (8-54)||(30352147-30352193)
chr3 (8-54)||(31483207-31483253)
chr3 (8-54)||(43012704-43012750)
chr3 (9-54)||(9583761-9583806)
chr3 (9-54)||(19176834-19176879)
chr3 (14-54)||(21343680-21343720)
chr3 (18-54)||(25506778-25506814)
chr3 (15-54)||(40023277-40023316)
chr3 (15-54)||(45399119-45399158)
chr3 (8-54)||(47236025-47236071)
chr3 (16-53)||(4463794-4463831)
chr3 (17-54)||(50305282-50305319)
chr3 (15-51)||(23328059-23328095)
chr3 (14-54)||(34475466-34475506)
[»] chr1 (14 HSPs)
chr1 (9-54)||(5459488-5459533)
chr1 (9-54)||(6804866-6804911)
chr1 (15-54)||(24659264-24659303)
chr1 (15-54)||(46814173-46814212)
chr1 (8-54)||(30685632-30685678)
chr1 (8-54)||(31584747-31584793)
chr1 (8-54)||(40216214-40216260)
chr1 (8-54)||(5389131-5389177)
chr1 (16-54)||(14320658-14320696)
chr1 (16-54)||(24449638-24449676)
chr1 (8-54)||(24684200-24684246)
chr1 (9-51)||(46692530-46692572)
chr1 (16-54)||(7002522-7002560)
chr1 (8-54)||(41920784-41920830)
[»] chr4 (16 HSPs)
chr4 (14-54)||(7703020-7703060)
chr4 (9-51)||(4306033-4306075)
chr4 (8-54)||(8705848-8705894)
chr4 (8-54)||(20464916-20464962)
chr4 (16-54)||(46698487-46698525)
chr4 (9-54)||(35329335-35329380)
chr4 (8-54)||(8255354-8255400)
chr4 (8-54)||(8268772-8268818)
chr4 (8-54)||(27555639-27555685)
chr4 (16-54)||(36689513-36689551)
chr4 (16-54)||(49528421-49528459)
chr4 (8-41)||(30964764-30964797)
chr4 (18-54)||(2826118-2826154)
chr4 (18-54)||(35341061-35341097)
chr4 (15-42)||(31050381-31050408)
chr4 (15-54)||(52868820-52868859)
[»] chr8 (21 HSPs)
chr8 (15-54)||(3584071-3584110)
chr8 (8-54)||(12897984-12898030)
chr8 (8-54)||(20138753-20138799)
chr8 (8-54)||(22773948-22773994)
chr8 (8-54)||(27889173-27889219)
chr8 (8-54)||(27947831-27947877)
chr8 (8-54)||(36631150-36631196)
chr8 (8-54)||(37986563-37986609)
chr8 (9-54)||(16457183-16457228)
chr8 (9-54)||(41893113-41893158)
chr8 (15-54)||(15821084-15821123)
chr8 (8-54)||(9519833-9519879)
chr8 (20-54)||(13538324-13538358)
chr8 (20-54)||(13686116-13686150)
chr8 (8-54)||(24995103-24995149)
chr8 (8-54)||(31207070-31207116)
chr8 (8-54)||(32065993-32066038)
chr8 (8-54)||(34388715-34388761)
chr8 (16-54)||(35821590-35821628)
chr8 (15-52)||(10837947-10837984)
chr8 (18-54)||(35815952-35815988)
[»] scaffold0434 (1 HSPs)
scaffold0434 (8-54)||(2381-2427)
[»] chr6 (4 HSPs)
chr6 (16-54)||(33697805-33697843)
chr6 (8-54)||(3117821-3117867)
chr6 (8-54)||(10542158-10542204)
chr6 (9-54)||(15944327-15944372)
[»] scaffold0172 (1 HSPs)
scaffold0172 (18-54)||(19255-19291)
[»] scaffold0343 (1 HSPs)
scaffold0343 (8-54)||(6032-6078)


Alignment Details
Target: chr2 (Bit Score: 43; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 39338615 - 39338569
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  39338615 gttttcaggtggttatggtgtaccgtctatatgcggcaccatttgta 39338569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 41877306 - 41877260
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  41877306 gttttcaggtggttatggtgtaccgtctatatacggtaccatttgta 41877260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 387511 - 387549
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  387511 gtggttatggtgtaccgtctatatgcggcaccatttgta 387549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 5254590 - 5254626
Alignment:
Q  18 ggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||| ||||||||||    
T  5254590 ggttatggtgtaccgtctatatgcggcaccatttgta 5254626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 14106269 - 14106233
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccattt 51  Q
    ||||||||||||||||||||||||||||| |||||||    
T  14106269 ggtggttatggtgtaccgtctatatgcggcaccattt 14106233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 14405532 - 14405572
Alignment:
Q  14 aggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  14405532 aggtggttatggtgtaccgtctatatgcagcaccatttgta 14405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 7874610 - 7874649
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  7874610 ggtggttatggtgtaccgtctatatgcggcgccatttgta 7874649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 14437010 - 14436975
Alignment:
Q  19 gttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14437010 gttatggtgtaccgtctatatgcggcaccatttgta 14436975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 10524425 - 10524471
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||||    
T  10524425 gtttttaggtggttatggtgtaccatctatatgctgcaccatttgta 10524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 43816191 - 43816155
Alignment:
Q  18 ggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||| | ||||||||    
T  43816191 ggttatggtgtaccgtctatatgcggcatcatttgta 43816155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 43
Target Start/End: Original strand, 15457278 - 15457305
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcgg 43  Q
    ||||||||||||||||||||||||||||    
T  15457278 gtggttatggtgtaccgtctatatgcgg 15457305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 17116635 - 17116596
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||| ||||||||||||||||||| | ||||||||    
T  17116635 ggtggttatagtgtaccgtctatatgcggcatcatttgta 17116596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 48662 - 48708
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  48662 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 48708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 5860037 - 5859991
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  5860037 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 5859991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 31971889 - 31971843
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  31971889 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 31971843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 38306587 - 38306633
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  38306587 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 38306633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 10244507 - 10244553
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  10244507 gtttttaggtggttatggtgtactgtctatatgcggcaccatttgta 10244553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 41089497 - 41089455
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatt 50  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  41089497 gtttttaggtggttatggtgtaccgtctatatgcggcaccatt 41089455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 44353318 - 44353272
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  44353318 gtttttaggtggttatggtgtaccatctatatgcggcaccatttgta 44353272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 47325639 - 47325593
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  47325639 gtttttaggtggttatggtgtaccgtctatatgcagcaccatttgta 47325593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 42454487 - 42454442
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||    
T  42454487 tttttaggtggttatggtgtactgtctatatgcggcaccatttgta 42454442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 25161135 - 25161179
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttg 52  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||    
T  25161135 gtttttaggtggttatggtgtaccgtctatatacggcaccatttg 25161179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 6585220 - 6585259
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  6585220 ggtggttatggtgtaccgtctatatgtggcaccatttgta 6585259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 33434585 - 33434539
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||| | | ||||||||||    
T  33434585 gtttttaggtggttatggtgtaccgtctatatacagaaccatttgta 33434539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 40726259 - 40726227
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatg 40  Q
    ||||| |||||||||||||||||||||||||||    
T  40726259 gtttttaggtggttatggtgtaccgtctatatg 40726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 48161788 - 48161748
Alignment:
Q  14 aggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||| |||||||||||||| || |||||||    
T  48161788 aggtggttatggtgtgccgtctatatgcggcactatttgta 48161748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 3867453 - 3867488
Alignment:
Q  19 gttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||| || ||||||||||    
T  3867453 gttatggtgtaccgtctatatgtggcaccatttgta 3867488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 7452915 - 7452961
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7452915 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 7452961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 698694 - 698740
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  698694 gtttttaggtggttatagtgtaccgtctatatgcggcaccatttgta 698740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 29087805 - 29087851
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  29087805 gtttttaggtggttatgatgtaccgtctatatgcggcaccatttgta 29087851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 34378426 - 34378472
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||    
T  34378426 gtttttagatggttatggtgtaccgtctatatgcggcaccatttgta 34378472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 18593569 - 18593610
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccat 49  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  18593569 gtttttaggtggttatggtgtaccgtctatatgcggcaccat 18593610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 41250939 - 41250904
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccattt 51  Q
    |||||||||||||||||||||||||||| |||||||    
T  41250939 gtggttatggtgtaccgtctatatgcggcaccattt 41250904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 5656847 - 5656801
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||  |||||||||||||||||| | ||||||||    
T  5656847 gtttttaggtggttatcatgtaccgtctatatgcggcatcatttgta 5656801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 2392257 - 2392211
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  2392257 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 2392211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 2394020 - 2393974
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  2394020 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 2393974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 45164180 - 45164226
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  45164180 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 45164226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 17551284 - 17551330
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  17551284 gtttttaggtggttatggtgtacagtctatatgcggcaccatttgta 17551330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 30352193 - 30352147
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  30352193 gtttttaggtggttatggtgtaccttctatatgcggcaccatttgta 30352147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 31483207 - 31483253
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  31483207 gtttttaggtggttatggtgtaccgtctatatgcagcaccatttgta 31483253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 43012704 - 43012750
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  43012704 gtttttaggtggttatggtgtatcgtctatatgcggcaccatttgta 43012750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 9583806 - 9583761
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  9583806 tttttaggtggttatggtgtatcgtctatatgcggcaccatttgta 9583761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 19176834 - 19176879
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||    
T  19176834 tttttaggtcgttatggtgtaccgtctatatgcggcaccatttgta 19176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 21343680 - 21343720
Alignment:
Q  14 aggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  21343680 aggtggttatgatgtaccgtctatatgcggcaccatttgta 21343720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 25506814 - 25506778
Alignment:
Q  18 ggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25506814 ggttatggtgtaccgtctatatgcggcaccatttgta 25506778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 40023316 - 40023277
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  40023316 ggtggttatggtgtaccgtctatatgcggcatcatttgta 40023277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 45399119 - 45399158
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  45399119 ggtggttatggtgtaccgtctatatgcggcaccgtttgta 45399158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 47236025 - 47236071
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| || |||||||||| |||||||||||||||| ||||||||||    
T  47236025 gtttttagatggttatggtataccgtctatatgcggcaccatttgta 47236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4463831 - 4463794
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgt 53  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  4463831 gtggttatggtgcaccgtctatatgcggcaccatttgt 4463794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 50305319 - 50305282
Alignment:
Q  17 tggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  50305319 tggttatggtgtaccgtctatatgcgacaccatttgta 50305282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 23328095 - 23328059
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccattt 51  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  23328095 ggtggttatggtgtaccgtatatatgcggcaccattt 23328059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 34475506 - 34475466
Alignment:
Q  14 aggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||| ||||||||||||| || ||||||||||    
T  34475506 aggtggttatggtataccgtctatatggggcaccatttgta 34475466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5459488 - 5459533
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||    
T  5459488 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 5459533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 6804866 - 6804911
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||    
T  6804866 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgta 6804911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 24659264 - 24659303
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  24659264 ggtggttatggtgtaccgtctatatgcggcaccatttgta 24659303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 46814212 - 46814173
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  46814212 ggtggttatggtgtaccgtctatatgcggcaccatttgta 46814173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 30685678 - 30685632
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  30685678 gtttttaggtggttatggtgtaccatctatatgcggcaccatttgta 30685632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 31584793 - 31584747
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  31584793 gtttttaggtggttatggtgtatcgtctatatgcggcaccatttgta 31584747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 40216260 - 40216214
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  40216260 gtttttaggtggttatgatgtaccgtctatatgcggcaccatttgta 40216214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 5389177 - 5389131
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||| |||| |||||||||||||| ||||||||||    
T  5389177 gtttttaggtggttatagtgtgccgtctatatgcggcaccatttgta 5389131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 14320658 - 14320696
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  14320658 gtggttatggtgtaccgtctatatgcgacaccatttgta 14320696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 24449676 - 24449638
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  24449676 gtggttatggtgtaccgtctatatgcagcaccatttgta 24449638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 24684246 - 24684200
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||| ||||||||||||||||||||| || ||||||||||    
T  24684246 gtttttaggtgattatggtgtaccgtctatatgtggcaccatttgta 24684200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 46692572 - 46692530
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccattt 51  Q
    |||| |||||||||||||||||||||| ||||||| |||||||    
T  46692572 tttttaggtggttatggtgtaccgtctttatgcggcaccattt 46692530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 7002522 - 7002560
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||| ||||||||| ||| ||||||    
T  7002522 gtggttatggtgtaccgtttatatgcggcaccttttgta 7002560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 41920784 - 41920830
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||| |||||||||||||||||| | || |||||||    
T  41920784 gtttttaggtggttacggtgtaccgtctatatgcagcacaatttgta 41920830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.0000000000009; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 7703020 - 7703060
Alignment:
Q  14 aggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  7703020 aggtggttatggtgtaccgtctatatgcggcaccatttgta 7703060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 4306033 - 4306075
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccattt 51  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  4306033 tttttaggtggttatggtgtaccgtctatatgcggcaccattt 4306075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 8705894 - 8705848
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  8705894 gtttttaggtggttatggtgtaccgtctatatgcagcaccatttgta 8705848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 20464916 - 20464962
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  20464916 gtttttaggtggttatggtgtaccgtctatatacggcaccatttgta 20464962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 46698525 - 46698487
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  46698525 gtggttatggtgtaccgtctatatgcggcaccatttgta 46698487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 35329335 - 35329380
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||    
T  35329335 tttttaggtggttatggtgtaccgtctatatgcagcaccatttgta 35329380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 8255354 - 8255400
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||| |||||||||||||||||| | ||||||||    
T  8255354 gtttttaggtggttatgatgtaccgtctatatgcggcatcatttgta 8255400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 8268772 - 8268818
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||| |||||||||||||||||| | ||||||||    
T  8268772 gtttttaggtggttatgatgtaccgtctatatgcggcatcatttgta 8268818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 27555685 - 27555639
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||||    
T  27555685 gtttttaggtggttatggtgtaccatctatatgcggcacaatttgta 27555639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 36689551 - 36689513
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  36689551 gtggttatagtgtaccgtctatatgcgataccatttgta 36689513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 49528421 - 49528459
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  49528421 gtggttttggtgtaccgtctatatgcggcaccatttgta 49528459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 30964764 - 30964797
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgc 41  Q
    ||||| ||||||||||||||||||||||||||||    
T  30964764 gtttttaggtggttatggtgtaccgtctatatgc 30964797  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 2826118 - 2826154
Alignment:
Q  18 ggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  2826118 ggttatggtgtaccgtatatatgcggcaccatttgta 2826154  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 35341097 - 35341061
Alignment:
Q  18 ggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||| || ||||||||||    
T  35341097 ggttatggtgtaccgtctatatgtggcaccatttgta 35341061  T

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Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 42
Target Start/End: Complemental strand, 31050408 - 31050381
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcg 42  Q
    ||||||||||||||||||||||||||||    
T  31050408 ggtggttatggtgtaccgtctatatgcg 31050381  T

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Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 52868859 - 52868820
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||| |||  ||||||||||    
T  52868859 ggtggttatggtgtaccgtctatacgcgacaccatttgta 52868820  T

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Target: chr8 (Bit Score: 36; Significance: 0.000000000004; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 3584071 - 3584110
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  3584071 ggtggttatggtgtaccgtctatatgcggcaccatttgta 3584110  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 12898030 - 12897984
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  12898030 gtttttaggtggtaatggtgtaccgtctatatgcggcaccatttgta 12897984  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 20138753 - 20138799
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  20138753 gtttttaggtggttatggtgtaccatctatatgcggcaccatttgta 20138799  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 22773948 - 22773994
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||    
T  22773948 gtttttagatggttatggtgtaccgtctatatgcggcaccatttgta 22773994  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 27889173 - 27889219
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  27889173 gtttttaggtggttatggtgtacagtctatatgcggcaccatttgta 27889219  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 27947831 - 27947877
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  27947831 gtttttaggtggttatggtgtacagtctatatgcggcaccatttgta 27947877  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 36631150 - 36631196
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  36631150 gtttttaggtgattatggtgtaccgtctatatgcggcaccatttgta 36631196  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 37986609 - 37986563
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  37986609 gtttttaggtggttatggtgtaccgtctatatgcagcaccatttgta 37986563  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 16457228 - 16457183
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| ||||||||||||||||||||||||||| || ||||||||||    
T  16457228 tttttaggtggttatggtgtaccgtctatatgtggcaccatttgta 16457183  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 41893158 - 41893113
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||    
T  41893158 tttttaggtggttatggtgtaccgtctatatgcgacaccatttgta 41893113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 15821123 - 15821084
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  15821123 ggtggttatggtataccgtctatatgcggcaccatttgta 15821084  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 9519833 - 9519879
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||    
T  9519833 gtttttaggtggttatgatgtactgtctatatgcggcaccatttgta 9519879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 13538324 - 13538358
Alignment:
Q  20 ttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||    
T  13538324 ttatgatgtaccgtctatatgcggtaccatttgta 13538358  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 13686150 - 13686116
Alignment:
Q  20 ttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||    
T  13686150 ttatgatgtaccgtctatatgcggtaccatttgta 13686116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 24995149 - 24995103
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||||||||| ||||||| |||| ||||||||||    
T  24995149 gtttttaggtggttatggtgtactgtctataagcggcaccatttgta 24995103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 31207116 - 31207070
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||| ||||| ||| ||||||||||    
T  31207116 gtttttaggtggttatggtgtaccgtttatatacggcaccatttgta 31207070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 32066038 - 32065993
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  32066038 gtttttaggtggttatg-tgtaccgtctatatgcggcaccatttgta 32065993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 34388761 - 34388715
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||| | || |||||||    
T  34388761 gtttttaggtggttatggtgtaccgtctatatgcagcactatttgta 34388715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 35821590 - 35821628
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  35821590 gtggttatggtgtaccgtctatatgcggcatcatttgta 35821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 10837984 - 10837947
Alignment:
Q  15 ggtggttatggtgtaccgtctatatgcggtaccatttg 52  Q
    ||||||||||||||||||||||||||||| || |||||    
T  10837984 ggtggttatggtgtaccgtctatatgcggcacgatttg 10837947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 35815988 - 35815952
Alignment:
Q  18 ggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||||||||||||||||||||| || ||||||||||    
T  35815988 ggttatggtgtaccgtctatatgtggcaccatttgta 35815952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 35; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 2427 - 2381
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  2427 gtttttaggtggttatggtgtaccgtctatatgcggcaccatctgta 2381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 33697843 - 33697805
Alignment:
Q  16 gtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  33697843 gtggttatggtgtaccgtctatatgcggcaccatttgta 33697805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 3117821 - 3117867
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||| ||||||||||| | ||||||||||    
T  3117821 gtttttaggtggttatggtgtagcgtctatatgctgcaccatttgta 3117867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 10542158 - 10542204
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| |||||||||||||||| ||||||||||||| ||| ||||||    
T  10542158 gtttttaggtggttatggtgtatcgtctatatgcggcaccttttgta 10542204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 15944327 - 15944372
Alignment:
Q  9 ttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||| ||||| |||||||||||||||||||||||  ||||||||||    
T  15944327 tttttaggtgtttatggtgtaccgtctatatgcgacaccatttgta 15944372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 19255 - 19291
Alignment:
Q  18 ggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    |||||||||||||||||||||||||| ||||||||||    
T  19255 ggttatggtgtaccgtctatatgcggcaccatttgta 19291  T

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Target: scaffold0343 (Bit Score: 27; Significance: 0.0000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 6032 - 6078
Alignment:
Q  8 gttttcaggtggttatggtgtaccgtctatatgcggtaccatttgta 54  Q
    ||||| ||||||||||| |||| ||||||||| ||| ||||||||||    
T  6032 gtttttaggtggttatgatgtaacgtctatatacggcaccatttgta 6078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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