View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_high_13 (Length: 430)
Name: NF17030_high_13
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 23290204 - 23290561
Alignment:
| Q |
20 |
atcagcaccattattgattcttcatggagcagcagacaaggtgacagatccattagtgagcaaatttttgtatgaaaatgcatctagcaaggataagact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23290204 |
atcagcaccattattgattcttcatggagcagcagacaaggtgacagatccattagtgagcaaatttctgtatgaaaatgcatctagcaaggataagact |
23290303 |
T |
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| Q |
120 |
ttaaagctctatgaaaatggttaccactgcattttggaaggtgagcctgatgatagaataaaagctgtacatgatgacattgtctcatggcttgattcta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23290304 |
ttaaagctctatgaaaatggttaccactgcattttggaaggggagcctgatgatagaataaaggctgtacatgatgacattgtctcatggcttgattcta |
23290403 |
T |
|
| Q |
220 |
ggtgtttagttaagtgagatttttccatggaatatttccttcatctttctaagtcattcttggagtaaaataatagcaacatttatgtttaaattgttaa |
319 |
Q |
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| T |
23290404 |
ggtgttcagttaagtgagatttttccatggaatatttccttcatcattctaagtcattcttggagtaagataatagcaacatttatgtttaaattgttaa |
23290503 |
T |
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| Q |
320 |
aatcctcctaactacattatttttacaattcaatttgggtggtagcataatgtctcta |
377 |
Q |
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| T |
23290504 |
aatcctcctaactacattatttttgcaattcaatttgggtggtagcataatgtgtcta |
23290561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 49931015 - 49931172
Alignment:
| Q |
21 |
tcagcaccattattgattcttcatggagcagcagacaaggtgacagatccattagtgagcaaatttttgtatgaaaatgcatctagcaaggataagactt |
120 |
Q |
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| T |
49931015 |
tcagctccactattgatacttcatggagcagaagataaggtgacagatccattggtgagccagtttctttacgagaaagcatctagcaaagacaagacac |
49931114 |
T |
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| Q |
121 |
taaagctctatgaaaatggttaccactgcattttggaaggtgagcctgatgatagaat |
178 |
Q |
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||||| |||||||| |||||||| |||||||||||||||| |||||||| ||||| |
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| T |
49931115 |
taaagatctatgaaggaggttaccatggcattttggaaggtgaacctgatgaaagaat |
49931172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 49935634 - 49935791
Alignment:
| Q |
21 |
tcagcaccattattgattcttcatggagcagcagacaaggtgacagatccattagtgagcaaatttttgtatgaaaatgcatctagcaaggataagactt |
120 |
Q |
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||||| ||||| ||||| ||||||||||||| | | ||| ||||| || |||| || ||| ||||| ||||||| || | || ||||| |||||||| | |
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| T |
49935634 |
tcagctccattcttgatacttcatggagcagaatataagatgacaaattcattggtaagccaatttctgtatgagaaagtgtcgagcaaagataagacat |
49935733 |
T |
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| Q |
121 |
taaagctctatgaaaatggttaccactgcattttggaaggtgagcctgatgatagaat |
178 |
Q |
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| T |
49935734 |
tgaagatctatgaaggaggttaccctggcattttggaaggtgaacctgaggaaagaat |
49935791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 7088193 - 7088264
Alignment:
| Q |
26 |
accattattgattcttcatggagcagcagacaaggtgacagatccattagtgagcaaatttttgtatgaaaa |
97 |
Q |
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| T |
7088193 |
accattattcattcttcatggagaagctgacacagtgactgatccatcagtgagcaaagcattgtatgaaaa |
7088264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 8804155 - 8804084
Alignment:
| Q |
26 |
accattattgattcttcatggagcagcagacaaggtgacagatccattagtgagcaaatttttgtatgaaaa |
97 |
Q |
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||||||||| ||||||||||||| ||| |||| ||||| ||||||| |||||||||| ||||||||||| |
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| T |
8804155 |
accattattcattcttcatggagaagctgacacagtgactgatccatcagtgagcaaagcattgtatgaaaa |
8804084 |
T |
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