View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17030_high_17 (Length: 376)

Name: NF17030_high_17
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17030_high_17
NF17030_high_17
[»] chr2 (29 HSPs)
chr2 (175-360)||(6577438-6577623)
chr2 (181-357)||(25892479-25892655)
chr2 (21-114)||(6577284-6577377)
chr2 (23-114)||(25892722-25892813)
chr2 (285-361)||(15848169-15848245)
chr2 (294-352)||(10840566-10840624)
chr2 (296-361)||(37895629-37895694)
chr2 (304-361)||(6573127-6573184)
chr2 (296-361)||(36382242-36382307)
chr2 (296-361)||(36479799-36479864)
chr2 (296-357)||(36755178-36755239)
chr2 (296-361)||(44714043-44714108)
chr2 (285-361)||(25893489-25893565)
chr2 (296-366)||(39423591-39423661)
chr2 (296-361)||(2318239-2318304)
chr2 (296-361)||(10712804-10712869)
chr2 (295-352)||(11689631-11689688)
chr2 (295-352)||(11721371-11721428)
chr2 (296-361)||(13692502-13692567)
chr2 (305-359)||(6657961-6658015)
chr2 (305-359)||(16099138-16099192)
chr2 (296-362)||(34448077-34448143)
chr2 (328-361)||(3555331-3555364)
chr2 (285-361)||(6573624-6573698)
chr2 (328-361)||(6588764-6588797)
chr2 (310-359)||(11163319-11163368)
chr2 (296-361)||(15848370-15848435)
chr2 (285-349)||(6846877-6846941)
chr2 (305-357)||(39498395-39498447)
[»] chr4 (39 HSPs)
chr4 (240-362)||(54434269-54434391)
chr4 (296-362)||(17356204-17356270)
chr4 (295-352)||(11857982-11858039)
chr4 (280-361)||(16605683-16605764)
chr4 (296-361)||(24411439-24411504)
chr4 (296-360)||(34765662-34765726)
chr4 (285-361)||(52909334-52909410)
chr4 (296-366)||(53701888-53701958)
chr4 (296-361)||(14801817-14801882)
chr4 (296-361)||(34765461-34765526)
chr4 (296-361)||(35028280-35028345)
chr4 (305-361)||(50418928-50418984)
chr4 (293-352)||(48529855-48529914)
chr4 (297-361)||(10781767-10781831)
chr4 (297-361)||(24349755-24349819)
chr4 (296-360)||(37976435-37976499)
chr4 (305-361)||(49879467-49879523)
chr4 (302-361)||(27891665-27891724)
chr4 (302-361)||(55867402-55867461)
chr4 (305-359)||(13058120-13058174)
chr4 (296-362)||(17356005-17356071)
chr4 (305-359)||(23613392-23613446)
chr4 (305-359)||(36009104-36009158)
chr4 (301-351)||(41583518-41583568)
chr4 (305-359)||(43155787-43155841)
chr4 (290-352)||(48528562-48528624)
chr4 (296-365)||(14802017-14802086)
chr4 (311-360)||(24711193-24711242)
chr4 (330-367)||(39538155-39538192)
chr4 (328-361)||(39539232-39539265)
chr4 (310-359)||(44967334-44967383)
chr4 (296-361)||(46661196-46661261)
chr4 (296-361)||(51692801-51692866)
chr4 (299-352)||(52298116-52298169)
chr4 (296-361)||(54086977-54087042)
chr4 (296-352)||(15507955-15508011)
chr4 (305-361)||(18831430-18831486)
chr4 (285-361)||(52909524-52909600)
chr4 (290-350)||(54435373-54435433)
[»] chr3 (18 HSPs)
chr3 (39-114)||(44960828-44960903)
chr3 (296-361)||(9294240-9294305)
chr3 (296-361)||(26463880-26463945)
chr3 (296-361)||(33689661-33689726)
chr3 (285-357)||(33156265-33156337)
chr3 (285-361)||(53756825-53756901)
chr3 (295-352)||(20704608-20704665)
chr3 (296-361)||(23458261-23458326)
chr3 (295-352)||(30380936-30380993)
chr3 (296-361)||(43384364-43384429)
chr3 (285-351)||(25108366-25108432)
chr3 (296-358)||(40758228-40758290)
chr3 (301-359)||(51994173-51994231)
chr3 (305-361)||(2796260-2796316)
chr3 (296-351)||(9367832-9367887)
chr3 (306-361)||(40033748-40033803)
chr3 (296-361)||(46475063-46475128)
chr3 (285-357)||(40506058-40506130)
[»] chr1 (36 HSPs)
chr1 (201-284)||(31197207-31197290)
chr1 (296-361)||(4960621-4960686)
chr1 (296-361)||(17662132-17662197)
chr1 (285-361)||(1103542-1103618)
chr1 (296-362)||(43758902-43758968)
chr1 (296-361)||(6367643-6367708)
chr1 (296-361)||(14879052-14879117)
chr1 (280-361)||(44523402-44523483)
chr1 (285-361)||(42248554-42248630)
chr1 (298-361)||(40210654-40210717)
chr1 (295-352)||(22103787-22103844)
chr1 (296-361)||(24009823-24009888)
chr1 (285-352)||(27999122-27999189)
chr1 (285-352)||(34850336-34850403)
chr1 (285-351)||(25065901-25065967)
chr1 (296-366)||(30711403-30711473)
chr1 (296-362)||(32917340-32917406)
chr1 (295-352)||(13245940-13245997)
chr1 (296-361)||(13914349-13914414)
chr1 (296-361)||(19017911-19017976)
chr1 (295-352)||(21444684-21444741)
chr1 (296-361)||(46163111-46163176)
chr1 (287-367)||(13300177-13300257)
chr1 (305-361)||(26024504-26024560)
chr1 (286-357)||(1841544-1841615)
chr1 (296-351)||(37578474-37578529)
chr1 (305-359)||(183482-183536)
chr1 (305-359)||(25647967-25648021)
chr1 (312-362)||(40772587-40772637)
chr1 (296-362)||(48779401-48779467)
chr1 (285-362)||(1103732-1103809)
chr1 (296-361)||(1841741-1841806)
chr1 (296-361)||(6367844-6367909)
chr1 (296-361)||(7821035-7821100)
chr1 (296-361)||(34464731-34464796)
chr1 (296-361)||(35152625-35152690)
[»] chr6 (17 HSPs)
chr6 (201-352)||(26463269-26463409)
chr6 (285-359)||(12080719-12080793)
chr6 (296-361)||(21627995-21628060)
chr6 (296-361)||(33517615-33517680)
chr6 (296-361)||(33647044-33647109)
chr6 (297-361)||(3059338-3059402)
chr6 (302-361)||(31407164-31407223)
chr6 (295-352)||(1215147-1215204)
chr6 (296-361)||(11392919-11392984)
chr6 (296-361)||(11434883-11434948)
chr6 (296-361)||(21627794-21627859)
chr6 (296-361)||(30725840-30725905)
chr6 (296-357)||(30803946-30804007)
chr6 (296-361)||(33517816-33517881)
chr6 (305-361)||(17734454-17734510)
chr6 (305-361)||(30337530-30337586)
chr6 (296-360)||(30804143-30804207)
[»] chr8 (27 HSPs)
chr8 (296-361)||(4405942-4406007)
chr8 (296-361)||(16388808-16388873)
chr8 (296-361)||(36928557-36928622)
chr8 (296-361)||(13186141-13186206)
chr8 (287-360)||(30459453-30459526)
chr8 (296-361)||(31608795-31608860)
chr8 (296-361)||(39071757-39071822)
chr8 (296-361)||(40318246-40318311)
chr8 (305-361)||(23698535-23698591)
chr8 (310-361)||(12273149-12273200)
chr8 (296-366)||(35756658-35756728)
chr8 (296-361)||(38955954-38956019)
chr8 (305-361)||(8316879-8316935)
chr8 (305-361)||(23663805-23663861)
chr8 (302-361)||(6471771-6471830)
chr8 (295-350)||(22890275-22890330)
chr8 (302-361)||(35634385-35634444)
chr8 (305-359)||(1425313-1425367)
chr8 (310-360)||(38862700-38862750)
chr8 (296-361)||(4994939-4995004)
chr8 (295-352)||(24085864-24085921)
chr8 (328-361)||(34061642-34061675)
chr8 (296-361)||(36928758-36928823)
chr8 (310-362)||(2534775-2534827)
chr8 (305-361)||(22915649-22915705)
chr8 (302-362)||(34176521-34176581)
chr8 (296-360)||(36186349-36186413)
[»] chr7 (30 HSPs)
chr7 (296-361)||(23181276-23181341)
chr7 (296-360)||(32053425-32053489)
chr7 (296-361)||(10935875-10935940)
chr7 (296-361)||(2640460-2640525)
chr7 (296-361)||(28469290-28469355)
chr7 (296-361)||(45010679-45010744)
chr7 (296-360)||(3914220-3914284)
chr7 (285-352)||(5457178-5457245)
chr7 (296-359)||(42731502-42731565)
chr7 (290-352)||(11397468-11397530)
chr7 (285-351)||(45915751-45915817)
chr7 (302-359)||(27396883-27396940)
chr7 (305-361)||(6571094-6571150)
chr7 (296-352)||(40379859-40379915)
chr7 (285-361)||(48789074-48789150)
chr7 (296-367)||(2640253-2640324)
chr7 (296-351)||(38643641-38643696)
chr7 (302-361)||(42618197-42618256)
chr7 (302-361)||(43124440-43124499)
chr7 (313-359)||(6253554-6253600)
chr7 (296-362)||(6253722-6253788)
chr7 (305-359)||(17102103-17102157)
chr7 (305-359)||(27991822-27991876)
chr7 (303-361)||(45010893-45010951)
chr7 (302-351)||(4226216-4226265)
chr7 (296-361)||(17885709-17885774)
chr7 (330-367)||(33808398-33808435)
chr7 (296-361)||(37656933-37656998)
chr7 (328-361)||(42362531-42362564)
chr7 (305-361)||(32298996-32299052)
[»] chr5 (40 HSPs)
chr5 (296-362)||(32242322-32242388)
chr5 (296-361)||(13962945-13963010)
chr5 (296-361)||(19892590-19892655)
chr5 (296-361)||(29646644-29646709)
chr5 (296-366)||(8322480-8322550)
chr5 (296-361)||(5993970-5994035)
chr5 (296-361)||(35512229-35512294)
chr5 (296-361)||(39453381-39453446)
chr5 (296-362)||(38442148-38442214)
chr5 (296-361)||(11047518-11047583)
chr5 (296-361)||(14194705-14194770)
chr5 (296-361)||(20840614-20840679)
chr5 (296-360)||(5024300-5024364)
chr5 (289-361)||(5255098-5255170)
chr5 (296-352)||(12904844-12904900)
chr5 (301-361)||(24547412-24547472)
chr5 (302-361)||(11741805-11741864)
chr5 (310-361)||(28269684-28269735)
chr5 (307-366)||(35920477-35920536)
chr5 (310-361)||(38475295-38475346)
chr5 (296-362)||(16156935-16157001)
chr5 (296-361)||(186500-186565)
chr5 (296-361)||(186701-186766)
chr5 (242-279)||(5255166-5255203)
chr5 (313-362)||(6150534-6150583)
chr5 (296-361)||(6150702-6150767)
chr5 (296-361)||(11047719-11047784)
chr5 (296-361)||(11740768-11740833)
chr5 (296-361)||(16157137-16157202)
chr5 (296-361)||(17202480-17202545)
chr5 (285-362)||(17202670-17202747)
chr5 (296-361)||(18247165-18247230)
chr5 (296-361)||(20814417-20814482)
chr5 (296-361)||(28269503-28269568)
chr5 (296-361)||(39453581-39453646)
chr5 (296-361)||(43159096-43159161)
chr5 (305-357)||(3529133-3529185)
chr5 (285-361)||(11761988-11762064)
chr5 (313-361)||(18670280-18670328)
chr5 (296-360)||(20814217-20814281)
[»] scaffold0031 (1 HSPs)
scaffold0031 (296-361)||(69046-69111)
[»] scaffold0005 (2 HSPs)
scaffold0005 (296-361)||(37845-37910)
scaffold0005 (296-365)||(37641-37710)
[»] scaffold0007 (1 HSPs)
scaffold0007 (305-361)||(1850-1906)
[»] scaffold0347 (1 HSPs)
scaffold0347 (285-351)||(14536-14602)
[»] scaffold0295 (1 HSPs)
scaffold0295 (296-360)||(2225-2289)
[»] scaffold0181 (1 HSPs)
scaffold0181 (295-323)||(9325-9353)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 175 - 360
Target Start/End: Original strand, 6577438 - 6577623
Alignment:
Q  175 tgcaggtgatgatgaataacattaagaagaacacgagaaagaatagggagaaggaagatgaaatcaagggcatttttgtcctttctcgtttgtatgtgaa 274  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  6577438 tgcaggtgatgatgaataacatgaagaagaacacgagaaagaatagggagaaggaagatgaaatcaagggcattttcgtcatttctcgtttgtatgtgaa 6577537  T
Q  275 atcagatgttccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||||| |||| ||||| |||||||||| |||||| |||||||    
T  6577538 atcagatgtgccacatcaactaattagtgacgtggcagtgattaagtgggaagagggacggatttttaaataattaaacaatgcaa 6577623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 181 - 357
Target Start/End: Complemental strand, 25892655 - 25892479
Alignment:
Q  181 tgatgatgaataacattaagaagaacacgagaaagaatagggagaaggaagatgaaatcaagggcatttttgtcctttctcgtttgtatgtgaaatcaga 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  25892655 tgatgatgaataacatgaagaagaacacgagaaagaatagggagaaggaagatgaaatcaagggcattttcgtcctttcacgtttgtatgtgaaatcaga 25892556  T
Q  281 tgttccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    ||| ||||||||||||||||| ||||||  ||| |||||||||  ||| ||||||||||||||||||||||| ||||    
T  25892555 tgtgccacatcagctaattagagacgtggtagtaattaagtggggagagggacgaatttttaaatgattaaacaatg 25892479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 6577284 - 6577377
Alignment:
Q  21 atcggcagagggatggtggtgactggatgcgaaatcatgaccggaagaggatcggagcagatacggcgttggcatggacggctcgcgatcggaa 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6577284 atcggcagagggacggtggtgactggatgcgaaatcatgaccggaagaggatcggagcagatacggcggtggcatggacggctcgcgatcggaa 6577377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 25892813 - 25892722
Alignment:
Q  23 cggcagagggatggtggtgactggatgcgaaatcatgaccggaagaggatcggagcagatacggcgttggcatggacggctcgcgatcggaa 114  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  25892813 cggcggagggacggtggtgactggatgcgaaatcatgaccggaagaggatcagagcagatacggcggcggcatggacggctcgcgatcggaa 25892722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 15848245 - 15848169
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  15848245 ccacatcatcaaattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 15848169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 10840624 - 10840566
Alignment:
Q  294 ctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||||    
T  10840624 ctaattagtgacgtgacagtgattaagtgggaagagggacgaaagtttaaatgattaaa 10840566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 37895629 - 37895694
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  37895629 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 37895694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 6573184 - 6573127
Alignment:
Q  304 acgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||||||| ||||||||    
T  6573184 acgtgacagtgattaaggggggagagggacgaatttttaaatgattaaacaatgcaag 6573127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 36382307 - 36382242
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||| ||| ||||||||||||||| ||||||||    
T  36382307 aattagtgacgtggcagtgattaagtggggagagggatgaaattttaaatgattaaacaatgcaag 36382242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 36479864 - 36479799
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  36479864 aattagtgacatggcagtgattaagtggggagatggacgaaattttaaatgattaaacaatgcaag 36479799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 36755239 - 36755178
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    ||||||||||||||||||||||||||||  |||  |||||| ||||||||||||||| ||||    
T  36755239 aattagtgacgtgacagtgattaagtggggagagagacgaaattttaaatgattaaacaatg 36755178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 44714043 - 44714108
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  44714043 aattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 44714108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 25893489 - 25893565
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| |||||||||||| |||||| ||||||||||| ||  |||   ||||||||||||||||||||| ||||||||    
T  25893489 ccacgtcagctaattagggacgtggcagtgattaaggggggagagaaacgaatttttaaatgattaaacaatgcaag 25893565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 39423661 - 39423591
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataa 366  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||| |||| ||||    
T  39423661 aattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatacaaggataa 39423591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 2318304 - 2318239
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| || | |||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  2318304 aattagtgacgtggcattaattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 2318239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 10712869 - 10712804
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||  |||||||||||||  ||| ||| ||| ||||||||||||||| ||||||||    
T  10712869 aattagtgacgtggtagtgattaagtggggagagggatgaaattttaaatgattaaacaatgcaag 10712804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 11689688 - 11689631
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||| ||||||||||||||  ||| ||||||| |||||| ||||||||    
T  11689688 taattagtgacgtggcagtgattaagtggggagatggacgaaattttaagtgattaaa 11689631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 11721371 - 11721428
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||||||||||||||||||  |||  |||||| |||||| ||||||||    
T  11721371 taattagtgacgtgacagtgattaagtggggagagagacgaaattttaagtgattaaa 11721428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 13692502 - 13692567
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  13692502 aattagtgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 13692567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 6658015 - 6657961
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  6658015 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 6657961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 16099192 - 16099138
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  16099192 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 16099138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 34448077 - 34448143
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || |||||||    
T  34448077 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaaga 34448143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 3555364 - 3555331
Alignment:
Q  328 aaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||||||||||||||||||||||||    
T  3555364 aaggacgaaattttaaatgattaaagaatgcaag 3555331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 6573698 - 6573624
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| |||||||||||| |||||| ||||||||||| ||   || |||| |||||||||||||||||| ||| ||||    
T  6573698 ccacgtcagctaattagggacgtggcagtgattaagggg--ggagggacaaatttttaaatgattaaacaattcaag 6573624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 6588797 - 6588764
Alignment:
Q  328 aaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||||||||||||||||||||||||    
T  6588797 aaggacgaaattttaaatgattaaagaatgcaag 6588764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 11163319 - 11163368
Alignment:
Q  310 cagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  11163319 cagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 11163368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 15848370 - 15848435
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  15848370 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 15848435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 6846941 - 6846877
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgatt 349  Q
    |||||||| | ||||| | ||||| |||| ||||||||| |||| ||||||| ||||||||||||    
T  6846941 ccacatcatcaaattactaacgtggcagtaattaagtgggaagagggacgaaattttaaatgatt 6846877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 39498447 - 39498395
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||    
T  39498447 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatg 39498395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 54434391 - 54434269
Alignment:
Q  240 aagggcatttttgtcctttctcgtttgtatgtgaaatcagatgttccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaattt 339  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||  |||| |||||| |||||||||||| |||||||||| ||| | |||||||| | ||    
T  54434391 aagggcattttcgtcctttcacgtttgtatgtgagatcagatgcaccacgtcagctgattagtgacgtggcagtgattaactgggatgaaggacgtaatt 54434292  T
Q  340 ttaaatgattaaagaatgcaaga 362  Q
    |||||||||||| || |||||||    
T  54434291 ttaaatgattaatgattgcaaga 54434269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 17356204 - 17356270
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||||||||||||||||||||||  ||| ||||||| ||||||||||| ||| |||||||||    
T  17356204 aattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgatcaaacaatgcaaga 17356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 11858039 - 11857982
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||    
T  11858039 taattagtgacgtgacagtgattaagtggaatgagggaccaatttttaagtgattaaa 11857982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 16605764 - 16605683
Alignment:
Q  280 atgttccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||   || ||||||| ||||||||||||||  ||||||||    
T  16605764 atgtgccacgtcagctaattagtgacgtggcagtgattaagtggggggagggacgaaattttaaatgattaatcaatgcaag 16605683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 24411504 - 24411439
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||  ||||||||||||| |||| |||||||| |||||||||||||| ||||||||    
T  24411504 aattagtgacgtgggagtgattaagtgggaagagggacgaatctttaaatgattaaacaatgcaag 24411439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 34765662 - 34765726
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| |||||||    
T  34765662 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaa 34765726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 52909410 - 52909334
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  52909410 ccacatcatcaaattagtgacatggcagtgattaagtggggagatggacgaaattttaaatgattaaacaatgcaag 52909334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 53701958 - 53701888
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataa 366  Q
    ||||||||||||| ||||||||||||||  ||| ||| ||| ||||||||||||||| |||||||| ||||    
T  53701958 aattagtgacgtggcagtgattaagtggggagagggaagaaattttaaatgattaaacaatgcaaggataa 53701888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 14801882 - 14801817
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||| ||||    
T  14801882 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatacaag 14801817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 34765526 - 34765461
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||||||||| ||   ||||||||| |||||||||||||| || ||||||    
T  34765526 aattagtgacgtgacagtgattaagttgatcaaaggacgaaattttaaatgattaatgattgcaag 34765461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 35028280 - 35028345
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  35028280 aattagtgacgtggcagtgattaagtggggagagtgacgaaattttaaatgattaaacaatgcaag 35028345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 50418928 - 50418984
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  50418928 cgtgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 50418984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 48529855 - 48529914
Alignment:
Q  293 gctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||| ||||||||| ||||||||||||||| ||| |||| || |||||||||||||||    
T  48529855 gctaatcagtgacgtggcagtgattaagtggagagagggacaaaattttaaatgattaaa 48529914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 10781767 - 10781831
Alignment:
Q  297 attagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||| |||| |||  ||| ||||||| |||||||||||||| || ||||||    
T  10781767 attagtgacgtgacagtggttaactggggagagggacgaaattttaaatgattaatgattgcaag 10781831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 24349819 - 24349755
Alignment:
Q  297 attagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||| |||||||||| |||  ||| ||||||| |||||||||||||| || ||||||    
T  24349819 attagtgacgtggcagtgattaactggggagagggacgaaattttaaatgattaatgattgcaag 24349755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 37976435 - 37976499
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    |||||||||| || ||||||||||||||  |||  |||||| ||||||||||||||| |||||||    
T  37976435 aattagtgacatggcagtgattaagtggggagagtgacgaaattttaaatgattaaacaatgcaa 37976499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 49879467 - 49879523
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  49879467 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 49879523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 27891724 - 27891665
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||| |    ||||||||| ||||||||||||||| ||||||||    
T  27891724 tgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaag 27891665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 55867402 - 55867461
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||| |||||||||| ||| || | ||||||| ||||||||||||||| ||||||||    
T  55867402 tgacgtggcagtgattaactgggaatagggacgaaattttaaatgattaaacaatgcaag 55867461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 13058174 - 13058120
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  13058174 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 13058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 17356071 - 17356005
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||||||| |||||||||||| |    || |||||| |||||||||||||| ||||||||||    
T  17356071 aattagtgacgtggcagtgattaagttggtcaaatgacgaaattttaaatgattaatgaatgcaaga 17356005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 23613446 - 23613392
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  23613446 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 23613392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 36009104 - 36009158
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  36009104 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 36009158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 41583518 - 41583568
Alignment:
Q  301 gtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    |||||||| |||||||||||||  |||| ||||||| ||||||||||||||    
T  41583518 gtgacgtggcagtgattaagtgagaagagggacgaaattttaaatgattaa 41583568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 43155787 - 43155841
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  43155787 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaataatgca 43155841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 48528624 - 48528562
Alignment:
Q  290 tcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    ||||||||| ||||| ||||||||||||||||||  | | | ||||| |||||||||||||||    
T  48528624 tcagctaatcagtgatgtgacagtgattaagtggggataggaacgaaattttaaatgattaaa 48528562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 14802017 - 14802086
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaata 365  Q
    ||||||||| ||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||||||    
T  14802017 aattagtgatgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaagaata 14802086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 24711242 - 24711193
Alignment:
Q  311 agtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    |||||||||||||  ||| ||||||| ||||||||||||||| |||||||    
T  24711242 agtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaa 24711193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 39538192 - 39538155
Alignment:
Q  330 ggacgaatttttaaatgattaaagaatgcaagaataat 367  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  39538192 ggacgaaattttaaatgattaaagaatgcaagactaat 39538155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 39539232 - 39539265
Alignment:
Q  328 aaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||||||||||||||||||||||||    
T  39539232 aaggacgaaattttaaatgattaaagaatgcaag 39539265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 44967334 - 44967383
Alignment:
Q  310 cagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  44967334 cagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 44967383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 46661196 - 46661261
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  46661196 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 46661261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 51692801 - 51692866
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| ||||||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  51692801 aattagtgacatgacagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 51692866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 52298169 - 52298116
Alignment:
Q  299 tagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||| ||||||||||||||  |||  |||||| |||||||||||||||    
T  52298169 tagtgacgtggcagtgattaagtggggagagagacgaaattttaaatgattaaa 52298116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 54086977 - 54087042
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| ||  |||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  54086977 aattagtgacatgttagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 54087042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 15507955 - 15508011
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    ||||||||||| | ||||||||||||||  |||  |||||| |||||||||||||||    
T  15507955 aattagtgacgcggcagtgattaagtggggagagagacgaaattttaaatgattaaa 15508011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 18831486 - 18831430
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  18831486 cgtggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 18831430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 52909524 - 52909600
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | |||| ||||||||||||||||||||| |    ||||||||| |||||||| ||||| || ||||||    
T  52909524 ccacatcatcgaatttgtgacgtgacagtgattaagttggtcaaaggacgaaattttaaataattaatgattgcaag 52909600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 54435373 - 54435433
Alignment:
Q  290 tcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgatta 350  Q
    ||||||||||||||| |||  |||||||||| || |||| ||||||| |||||||| ||||    
T  54435373 tcagctaattagtgatgtgttagtgattaagggggaagagggacgaaattttaaataatta 54435433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 44960828 - 44960903
Alignment:
Q  39 gtgactggatgcgaaatcatgaccggaagaggatcggagcagatacggcgttggcatggacggctcgcgatcggaa 114  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44960828 gtgactggatgcgaaatcacgatcgaaagaggatcggagcagatacggcggcggcatggacggctcgcgatcggaa 44960903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 9294240 - 9294305
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |||||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  9294240 aattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 9294305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 26463880 - 26463945
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||| ||| ||||    
T  26463880 aattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatacaag 26463945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 33689661 - 33689726
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  33689661 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaataatgcaag 33689726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 33156265 - 33156337
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    |||| ||||||||||||||||||| ||||||||||||||   || ||||||| ||||||||||||||| ||||    
T  33156265 ccacgtcagctaattagtgacgtggcagtgattaagtggggggagggacgaaattttaaatgattaaacaatg 33156337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 53756901 - 53756825
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | |||||||||| ||||| ||||||| ||| |||| ||||||| ||||||||||||||| ||||||||    
T  53756901 ccacatcatcaaattagtgacatgacaatgattaaatgggaagatggacgaaattttaaatgattaaacaatgcaag 53756825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 20704608 - 20704665
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||||| |||||||||||| |||| ||||||| |||||| ||||||||    
T  20704608 taattagtgacgtgactgtgattaagtgggaagagggacgaaattttaagtgattaaa 20704665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 23458261 - 23458326
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  23458261 aattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 23458326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 30380993 - 30380936
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||| |||||||||||||||    
T  30380993 taattagtgacgtggcagtgatcaagtggacagagggacgaaattttaaatgattaaa 30380936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 43384429 - 43384364
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |||||||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  43384429 aattagtgacatgacagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 43384364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 25108366 - 25108432
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    |||| ||||||||| ||||||||| |||||||||| ||  | |||||||||| ||||||||||||||    
T  25108366 ccacgtcagctaatcagtgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgattaa 25108432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 40758290 - 40758228
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgc 358  Q
    |||||||||||||  |||||||||||||  ||| ||||||| ||||||||||||||| |||||    
T  40758290 aattagtgacgtggtagtgattaagtggggagagggacgaaattttaaatgattaaacaatgc 40758228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 51994173 - 51994231
Alignment:
Q  301 gtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  51994173 gtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 51994231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 2796316 - 2796260
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  2796316 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 2796260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 9367887 - 9367832
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    ||||||||||||| |||||||||| ||| | || ||||||| ||||||||||||||    
T  9367887 aattagtgacgtggcagtgattaattgggatgagggacgaaattttaaatgattaa 9367832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 40033748 - 40033803
Alignment:
Q  306 gtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||||||||  ||| |||| || ||||||||||||||| ||||||||    
T  40033748 gtgacagtgattaagtggggagagggacaaaattttaaatgattaaacaatgcaag 40033803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 46475063 - 46475128
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  46475063 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 46475128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 40506058 - 40506130
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    |||||||| | ||||||| || ||||||||||||||||   |||  |||||| ||||||||||||||| ||||    
T  40506058 ccacatcatcaaattagttacatgacagtgattaagtgcggagagagacgaaattttaaatgattaaataatg 40506130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 31197290 - 31197207
Alignment:
Q  201 aagaacacgagaaagaatagggagaaggaagatgaaatcaagggcatttttgtcctttctcgtttgtatgtgaaatcagatgtt 284  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||||| ||||||||  |||||| || |||||||||||||    
T  31197290 aagaacacgagaaagaagaaggagaaagaagatgaaatcaagggcattttcgtcctttcatgtttgtctgcgaaatcagatgtt 31197207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 4960686 - 4960621
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||| ||||||||    
T  4960686 aattagtgacgtggcagtgattaagtgggaagagggacgaaattttaaatgattaaacaatgcaag 4960621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 17662132 - 17662197
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||| ||||||||    
T  17662132 aattagtgacgtggcagtgattaagtgggaagagggacgaaattttaaatgattaaacaatgcaag 17662197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 1103618 - 1103542
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | |||||||||| |||||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  1103618 ccacatcatcaaattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 1103542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 43758968 - 43758902
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    |||||||||| || ||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||    
T  43758968 aattagtgacatggcagtgattaagtggagagagggacgaaattttaaatgattaaacaatgcaaga 43758902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 6367708 - 6367643
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  6367708 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 6367643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 14879117 - 14879052
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |||||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  14879117 aattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 14879052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 44523402 - 44523483
Alignment:
Q  280 atgttccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| |||| ||||||||||||||||||| ||||||||||||| |  || ||| ||| ||||||||||||||| ||||||||    
T  44523402 atgtgccacgtcagctaattagtgacgtggcagtgattaagtgaagggagggatgaaattttaaatgattaaacaatgcaag 44523483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 42248630 - 42248554
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | ||||||| ||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  42248630 ccacatcaacaaattagtcacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 42248554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 40210654 - 40210717
Alignment:
Q  298 ttagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  40210654 ttagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 40210717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 22103787 - 22103844
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||| ||||||||||||||| ||| ||||||| |||||| ||||||||    
T  22103787 taattagtgacgtggcagtgattaagtggagagagggacgaaattttaagtgattaaa 22103844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 24009823 - 24009888
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  24009823 aattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 24009888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 27999122 - 27999189
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||| ||||||||| ||| |||||||||||||| ||||  |||||| ||| |||||||||||    
T  27999122 ccacatcagcaaattagtgaggtggcagtgattaagtgggaagagagacgaaatttaaaatgattaaa 27999189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 34850336 - 34850403
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||| ||||||||| ||||||||| ||||||||||||||  ||| ||| ||| |||||||||||||||    
T  34850336 ccacgtcagctaatcagtgacgtggcagtgattaagtggggagagggatgaaattttaaatgattaaa 34850403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 25065901 - 25065967
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    |||| ||||||||| ||||| ||| ||||||||||||||| ||| ||||||| | ||||||||||||    
T  25065901 ccacgtcagctaatcagtgaggtggcagtgattaagtggagagagggacgaaatcttaaatgattaa 25065967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 30711473 - 30711403
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataa 366  Q
    |||||||||| || ||||||||||||||   || ||||||| ||||||||||||||| |||||||| ||||    
T  30711473 aattagtgacatggcagtgattaagtggggcgagggacgaaattttaaatgattaaacaatgcaaggataa 30711403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 32917406 - 32917340
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||| ||| ||||||||||||||  |||  |||||| ||||||||||||||| |||||||||    
T  32917406 aattagtgatgtggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaaga 32917340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 13245997 - 13245940
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||||||||||||||||||  ||| |||| || |||||| ||||||||    
T  13245997 taattagtgacgtgacagtgattaagtggggagagggacaaaattttaagtgattaaa 13245940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 13914349 - 13914414
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||| |||||  ||| ||||||| ||||||||||||||| ||| ||||    
T  13914349 aattagtgacgtggcagtgatttagtggggagagggacgaaattttaaatgattaaacaatacaag 13914414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 19017911 - 19017976
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| | | |||||||||||||| |||| |||| || ||||||||||||||| ||||||||    
T  19017911 aattagtgatgcggcagtgattaagtgggaagagggacaaaattttaaatgattaaataatgcaag 19017976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 21444741 - 21444684
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||| ||||||||||||||  ||| ||||||| |||||| ||||||||    
T  21444741 taattagtgacgtggcagtgattaagtggggagatggacgaaattttaagtgattaaa 21444684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 46163176 - 46163111
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| ||||||| |||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  46163176 aattagtgacatgacagtaattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 46163111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 367
Target Start/End: Original strand, 13300177 - 13300257
Alignment:
Q  287 acatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataat 367  Q
    |||||||||||| ||||||||| || |||||||||||   ||||||  ||||||||| | ||||||||||| |||| ||||    
T  13300177 acatcagctaatcagtgacgtggcactgattaagtgggttgaaggatcaatttttaagttattaaagaatgtaagagtaat 13300257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 26024560 - 26024504
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  26024560 cgtggcagtgattaagtggggagagggacgaacttttaaatgattaaacaatgcaag 26024504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 1841615 - 1841544
Alignment:
Q  286 cacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    ||||||| | |||||||||| || ||||||||||||||  |||  |||||| ||||||||||||||| ||||    
T  1841615 cacatcatcaaattagtgacatggcagtgattaagtggggagagtgacgaaattttaaatgattaaacaatg 1841544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 37578474 - 37578529
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    ||||||||||||| ||||||||||||||  |||  |||||| ||||||||||||||    
T  37578474 aattagtgacgtggcagtgattaagtggggagagtgacgaaattttaaatgattaa 37578529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 183482 - 183536
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  183482 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaataatgca 183536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 25648021 - 25647967
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  25648021 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaataatgca 25647967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 40772637 - 40772587
Alignment:
Q  312 gtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||||||  ||| ||||||| ||||||||||||||| |||||||||    
T  40772637 gtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaaga 40772587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 48779401 - 48779467
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || |||||||    
T  48779401 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaaga 48779467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 1103732 - 1103809
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    |||||||| | ||||||||||||| |||||| ||||| |    ||||||||| |||||||||||||| || |||||||    
T  1103732 ccacatcatcaaattagtgacgtggcagtgaataagttggtcaaaggacgaaattttaaatgattaatgattgcaaga 1103809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 1841741 - 1841806
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  1841741 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 1841806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 6367844 - 6367909
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  6367844 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 6367909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 7821100 - 7821035
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||| || |    ||||||||| ||||||||||||||| ||||||||    
T  7821100 aattagtgacgtggcagtgattacgttggtcaaaggacgaaattttaaatgattaaacaatgcaag 7821035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 34464731 - 34464796
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  ||| |||| || ||||||||||||||| | ||||||    
T  34464731 aattagtgacatggcagtgattaagtggggagagggacaaaattttaaatgattaaacattgcaag 34464796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 35152625 - 35152690
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| |||||||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  35152625 aattagtgatgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 35152690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 352
Target Start/End: Complemental strand, 26463409 - 26463269
Alignment:
Q  201 aagaacacgagaaagaatagggagaaggaagatgaaatcaagggcatttttgtcctttctcgtttgtatgtgaaatcagatgttccacatcagctaatta 300  Q
    ||||||||||||||||| | ||||||  |||||||||||||||||||||| ||||||||  |||| | |||||||||||||||           |||| |    
T  26463409 aagaacacgagaaagaagaaggagaaaaaagatgaaatcaagggcattttcgtcctttcatgtttttctgtgaaatcagatgt-----------taatca 26463321  T
Q  301 gtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||| |||||||||| ||| | || ||||||| |||||||||||||||    
T  26463320 gtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaaa 26463269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 12080793 - 12080719
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||||||| | |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  12080793 ccacatcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 12080719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 21627995 - 21628060
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| |||| || ||||||||||||||| ||||||||    
T  21627995 aattagtgacgtggcagtgattaagtggggagagggacaaaattttaaatgattaaacaatgcaag 21628060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 33517680 - 33517615
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||  ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  33517680 aattagtgacgtagcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 33517615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 33647109 - 33647044
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||| |||  |||  |||||| ||||||||||||||| ||||||||    
T  33647109 aattagtgacgtggcagtgattaaatggggagagagacgaaattttaaatgattaaataatgcaag 33647044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 3059402 - 3059338
Alignment:
Q  297 attagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| || |||||||||||||   ||| ||||||| ||||||||||||||| ||||||||    
T  3059402 attagtgacatggcagtgattaagtgaggagagggacgaaattttaaatgattaaacaatgcaag 3059338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 31407164 - 31407223
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||| |    ||||||||| ||||||||||||||| ||||||||    
T  31407164 tgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaag 31407223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 1215147 - 1215204
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||| ||||||||||||||  | | ||||||| |||||| ||||||||    
T  1215147 taattagtgacgtggcagtgattaagtggggatagggacgaaattttaagtgattaaa 1215204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 11392984 - 11392919
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || |||||||||||| |  |||  |||||| ||||||||||||||| ||||||||    
T  11392984 aattagtgacatggcagtgattaagttgggagatagacgaaattttaaatgattaaacaatgcaag 11392919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 11434948 - 11434883
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||| |||    ||||||||| |||||||||||||| || ||||||    
T  11434948 aattagtgacgtggcagtgattaactgggtcaaaggacgaaattttaaatgattaatgattgcaag 11434883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 21627859 - 21627794
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  21627859 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 21627794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 30725905 - 30725840
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || |||||||||| |||  ||| ||||||| ||||||||||||||| | ||||||    
T  30725905 aattagtgacatggcagtgattaaatggggagagggacgaaattttaaatgattaaacagtgcaag 30725840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 30804007 - 30803946
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    |||||||||  || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||    
T  30804007 aattagtgagatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatg 30803946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 33517816 - 33517881
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  33517816 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 33517881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 17734454 - 17734510
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| |||| || ||||||||||||||| ||||||||    
T  17734454 cgtggcagtgattaagtggggagagggacaaaattttaaatgattaaacaatgcaag 17734510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 30337586 - 30337530
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||  ||||||||    
T  30337586 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaccaatgcaag 30337530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 30804143 - 30804207
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || |||||    
T  30804143 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaa 30804207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 4405942 - 4406007
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| | ||||||    
T  4405942 aattagtgacgtgacagtgattaagtgggaagagggacgaaattttaaatgattaaacattgcaag 4406007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 16388808 - 16388873
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  16388808 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 16388873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 36928622 - 36928557
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  36928622 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 36928557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 13186206 - 13186141
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  13186206 aattagtgacgtggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 13186141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 30459526 - 30459453
Alignment:
Q  287 acatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    |||||||||||| |||||| ||||| || ||||||||   ||||||| ||||||||| ||||||||||||||||    
T  30459526 acatcagctaatcagtgacatgacactggttaagtgggttgaaggaccaatttttaagtgattaaagaatgcaa 30459453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 31608795 - 31608860
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||| | ||||||||    
T  31608795 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattagacaatgcaag 31608860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 39071822 - 39071757
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||| | ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  39071822 aattagtgacgcggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 39071757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 40318246 - 40318311
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || |||||||||||||   ||||||||||| ||||||||||||||| ||||||||    
T  40318246 aattagtgacatggcagtgattaagtgaggagaaggacgaaattttaaatgattaaacaatgcaag 40318311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 23698535 - 23698591
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  23698535 cgtgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 23698591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 12273149 - 12273200
Alignment:
Q  310 cagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||| |||| ||||||| ||||||||||||||| ||||||||    
T  12273149 cagtgattaagtgggaagagggacgaaattttaaatgattaaacaatgcaag 12273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 35756728 - 35756658
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataa 366  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||| |||| ||||    
T  35756728 aattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaattcaaggataa 35756658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 38955954 - 38956019
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||||||||| ||   |||||| || |||||||||||||| || ||||||    
T  38955954 aattagtgacgtgacagtgattaagttgatcaaaggactaaattttaaatgattaatgattgcaag 38956019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 8316879 - 8316935
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  8316879 cgtggcagtgattaagtggggagatggacgaaattttaaatgattaaacaatgcaag 8316935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 23663805 - 23663861
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  23663805 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 23663861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 6471830 - 6471771
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||| |||||||||||| || | || |||||| ||||||||||||||| ||||||||    
T  6471830 tgacgtggcagtgattaagttgataaaaagacgaaattttaaatgattaaacaatgcaag 6471771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 22890275 - 22890330
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgatta 350  Q
    |||||||||| |||||||||||||||||| |||| |||| || |||||| ||||||    
T  22890275 taattagtgatgtgacagtgattaagtgggaagagggacaaaattttaagtgatta 22890330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 35634385 - 35634444
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||| |    ||||||||| ||||||||||||||| ||||||||    
T  35634385 tgacgtgacagtgattaagttggttaaaggacgaaattttaaatgattaaacaatgcaag 35634444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 1425313 - 1425367
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  1425313 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 1425367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 38862750 - 38862700
Alignment:
Q  310 cagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||| |||||||    
T  38862750 cagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaa 38862700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 4994939 - 4995004
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |||||  ||||||||||  ||| ||||||| ||| ||||||||||| ||||||||    
T  4994939 aattagtgacatgacatggattaagtggggagagggacgaaatttgaaatgattaaacaatgcaag 4995004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 24085921 - 24085864
Alignment:
Q  295 taattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||||||||||||||||||  ||| |||| || ||||||  |||||||    
T  24085921 taattagtgacgtgacagtgattaagtggggagagggacaaaattttaagcgattaaa 24085864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 34061642 - 34061675
Alignment:
Q  328 aaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||||||||||||||||||||||||    
T  34061642 aaggacgaaattttaaatgattaaagaatgcaag 34061675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 36928758 - 36928823
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  36928758 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 36928823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 2534827 - 2534775
Alignment:
Q  310 cagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    |||||||||| ||| || | ||||||| ||||||||||||||| |||||||||    
T  2534827 cagtgattaactgggaatagggacgaaattttaaatgattaaacaatgcaaga 2534775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 22915649 - 22915705
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||| | ||||||||||||||| ||||||||    
T  22915649 cgtggcagtgattaagtggggagagggacggaattttaaatgattaaacaatgcaag 22915705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 34176581 - 34176521
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    |||| ||||||||||||| |||    ||||| ||| |||||||||||||||||||||||||    
T  34176581 tgacctgacagtgattaactgggtcaaaggatgaaattttaaatgattaaagaatgcaaga 34176521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 36186349 - 36186413
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||| | ||| |||||||||||| |  ||| ||||||| ||||||||||||||| |||||||    
T  36186349 aattagtaatgtggcagtgattaagtagggagagggacgaaattttaaatgattaaacaatgcaa 36186413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 23181276 - 23181341
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  23181276 aattagtgacatgacagtgattaagtggagagagggacgaaattttaaatgattaaacaatgcaag 23181341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 32053425 - 32053489
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||| |||||||    
T  32053425 aattagtgacgtgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaa 32053489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 10935940 - 10935875
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  10935940 aattagtgacatggcagtgattaagtggagagagggacgaaattttaaatgattaaacaatgcaag 10935875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 2640460 - 2640525
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |||||||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  2640460 aattagtgacatgacagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 2640525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 28469290 - 28469355
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||  |||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  28469290 aattagtgacgtggtagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 28469355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 45010744 - 45010679
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  45010744 aattagtgacttggcagtgattaagtggggagatggacgaaattttaaatgattaaacaatgcaag 45010679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 3914284 - 3914220
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||| ||| |||||||||||| | |||| ||||||| ||||||||||||||| |||||||    
T  3914284 aattagtgatgtggcagtgattaagttggaagagggacgaaattttaaatgattaaacaatgcaa 3914220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 5457178 - 5457245
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||| ||||||||| ||||||||| |||||||||| ||| | || ||||||| |||||||||||||||    
T  5457178 ccacgtcagctaatcagtgacgtggcagtgattaactgggatgagggacgaaattttaaatgattaaa 5457245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 42731565 - 42731502
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  42731565 aattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 42731502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 11397530 - 11397468
Alignment:
Q  290 tcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||||||||||||||||||| ||| | ||  ||| || |||||||||||||||    
T  11397530 tcagctaattagtgacgtgacagtgattaattgggatgagagactaaattttaaatgattaaa 11397468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 45915751 - 45915817
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    |||| ||||||||| ||||||||| ||||||||||  ||||||| ||||| | ||||||||||||||    
T  45915751 ccacgtcagctaatcagtgacgtggcagtgattaatcggaaagagggacggaattttaaatgattaa 45915817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 27396883 - 27396940
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    ||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  27396883 tgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 27396940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 6571150 - 6571094
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||  ||| |||| || ||||||||||||||| ||||||||    
T  6571150 cgtgacagtgattaagtggggagagggacaaaattttaaatgattaaacaatgcaag 6571094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 40379915 - 40379859
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    ||||||||||||| || |||||||||||  ||| ||||||| |||||||||||||||    
T  40379915 aattagtgacgtggcattgattaagtggggagagggacgaaattttaaatgattaaa 40379859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 48789074 - 48789150
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | |||||||||| ||||| |||| ||||||  ||| ||| ||| ||||||||||||||| ||||||||    
T  48789074 ccacatcatcaaattagtgacatgacaatgatcaagtggggagagggatgaaattttaaatgattaaacaatgcaag 48789150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 2640324 - 2640253
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataat 367  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||| ||||    
T  2640324 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaagactaat 2640253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 38643696 - 38643641
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    |||||||||||||||||| |||||||||  ||| ||||||| | ||||||||||||    
T  38643696 aattagtgacgtgacagtaattaagtggggagagggacgaaatcttaaatgattaa 38643641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 42618197 - 42618256
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||| |    ||||||||| ||||||||||||||| ||||||||    
T  42618197 tgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaag 42618256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 43124440 - 43124499
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||| |||||||||| ||| || | ||||||| ||||||||||||||| ||||||||    
T  43124440 tgacgtggcagtgattaactgggaatagggacgaaattttaaatgattaaacaatgcaag 43124499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 6253600 - 6253554
Alignment:
Q  313 tgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||||||||||| ||| ||||||| ||||||||||||||| ||||||    
T  6253600 tgattaagtggagagagggacgaaattttaaatgattaaacaatgca 6253554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 6253722 - 6253788
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    |||||||||||||||||||||||||| |    |||||| || |||||||||||||| || |||||||    
T  6253722 aattagtgacgtgacagtgattaagttggtcaaaggactaaattttaaatgattaatgattgcaaga 6253788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 17102157 - 17102103
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  17102157 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 17102103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 27991876 - 27991822
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgca 359  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||    
T  27991876 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgca 27991822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 45010893 - 45010951
Alignment:
Q  303 gacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||| ||||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  45010893 gacgtggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 45010951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 4226265 - 4226216
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    ||||||| ||||||||||  || |||||||||||| ||||||||||||||    
T  4226265 tgacgtggcagtgattaaccgggaagaaggacgaaattttaaatgattaa 4226216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 17885774 - 17885709
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||| |||    ||||||||| |||||||||||||| || ||||||    
T  17885774 aattagtgacgtggcagtgattaactgggtcaaaggacgaaattttaaatgattaatgattgcaag 17885709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 33808435 - 33808398
Alignment:
Q  330 ggacgaatttttaaatgattaaagaatgcaagaataat 367  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  33808435 ggacgaaattttaaatgattaaagaatgcaagactaat 33808398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 37656998 - 37656933
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| | ||||||||||||  ||| ||||||| |||||||| | |||| ||||||||    
T  37656998 aattagtgacgtgccggtgattaagtggggagagggacgaaattttaaataaataaacaatgcaag 37656933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 42362564 - 42362531
Alignment:
Q  328 aaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||||||||||||||||||||||||    
T  42362564 aaggacgaaattttaaatgattaaagaatgcaag 42362531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 32298996 - 32299052
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| |||| |||||||||| ||||||||    
T  32298996 cgtggcagtgattaagtggggagagggacgaaattttcaatgattaaacaatgcaag 32299052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 32242388 - 32242322
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| |||||||||    
T  32242388 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaaga 32242322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 13963010 - 13962945
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||||||||||||||   ||| ||||||| ||||||||||||||| ||||||||    
T  13963010 aattagtgacgtgacagtgattaagtgaggagagggacgaaattttaaatgattaaacaatgcaag 13962945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 19892590 - 19892655
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  |||| |||||| ||||||||||||||| ||||||||    
T  19892590 aattagtgacgtggcagtgattaagtggggagaatgacgaaattttaaatgattaaacaatgcaag 19892655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 29646644 - 29646709
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |||||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  29646644 aattagtgacatgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 29646709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 8322550 - 8322480
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataa 366  Q
    |||||||||  |||||||||||||||||  ||| ||||||| ||||||||||||||| |||||||| ||||    
T  8322550 aattagtgaaatgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaaggataa 8322480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 5994035 - 5993970
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  5994035 aattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 5993970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 35512294 - 35512229
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||| ||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  35512294 aattagtgatgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 35512229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 39453446 - 39453381
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  39453446 aattagtgacatgccagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 39453381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 38442214 - 38442148
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||| | ||| ||||||||||||||  ||| ||||||| ||||||||||||||| |||||||||    
T  38442214 aattagttatgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaaga 38442148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 11047583 - 11047518
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  |||  |||||| ||||||||||||||| ||||||||    
T  11047583 aattagtgacatggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaag 11047518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 14194705 - 14194770
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| |  ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  14194705 aattagtgacatagcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 14194770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 20840679 - 20840614
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| |||| || |||||||| |||||| ||||||||    
T  20840679 aattagtgacgtggcagtgattaagtggggagagggacaaaattttaaatcattaaacaatgcaag 20840614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 5024300 - 5024364
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||| ||| ||||||||||||||  ||| | ||||| ||||||||||||||| |||||||    
T  5024300 aattagtgatgtggcagtgattaagtggggagaggaacgaaattttaaatgattaaacaatgcaa 5024364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 5255170 - 5255098
Alignment:
Q  289 atcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||| ||||||||||||||||||||||||| |    || |||||| ||||||||||||||  ||||||||    
T  5255170 atcagctgattagtgacgtgacagtgattaagttggtcaaatgacgaaattttaaatgattaataaatgcaag 5255098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 12904900 - 12904844
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaa 352  Q
    |||||||||||||||| |||||||||||  ||| ||||||| |||||||| ||||||    
T  12904900 aattagtgacgtgacattgattaagtggggagagggacgaaattttaaattattaaa 12904844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 24547412 - 24547472
Alignment:
Q  301 gtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| ||||| ||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  24547412 gtgacgtggcagtggttaagtggggagagggacgaaattttaaatgattaaacaatgcaag 24547472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 11741805 - 11741864
Alignment:
Q  302 tgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||| |||    ||||||||| ||||||||||||||||||||||||    
T  11741805 tgacctgacagtgattaactgggtcaaaggacgaaattttaaatgattaaagaatgcaag 11741864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 28269684 - 28269735
Alignment:
Q  310 cagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  28269684 cagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 28269735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 35920477 - 35920536
Alignment:
Q  307 tgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaataa 366  Q
    |||||||||||||||||  ||| ||||||| ||||||||||||||| |||| ||| ||||    
T  35920477 tgacagtgattaagtggggagagggacgaaattttaaatgattaaacaatggaaggataa 35920536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 38475295 - 38475346
Alignment:
Q  310 cagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  38475295 cagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 38475346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 16157001 - 16156935
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || |||||||    
T  16157001 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaaga 16156935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 186565 - 186500
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| ||  |||||||||||||   || ||||||| ||||||||||||||| ||||||||    
T  186565 aattagtgacatggtagtgattaagtggggggagggacgaaattttaaatgattaaacaatgcaag 186500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 186701 - 186766
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||||||| ||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  186701 aattagtgacgtgacaatgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 186766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 5255203 - 5255166
Alignment:
Q  242 gggcatttttgtcctttctcgtttgtatgtgaaatcag 279  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  5255203 gggcattttagtcctttcacgtttgtatgtgaaatcag 5255166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 6150583 - 6150534
Alignment:
Q  313 tgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    |||||||||||  ||| ||||||| ||||||||||||||| |||||||||    
T  6150583 tgattaagtggggagagggacgaaattttaaatgattaaacaatgcaaga 6150534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 6150702 - 6150767
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  6150702 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 6150767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 11047719 - 11047784
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  11047719 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 11047784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 11740833 - 11740768
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||| |||||||||||| ||||| |||    |||||| || ||||||||||||||||||||||||    
T  11740833 aattaatgacgtgacagtcattaactgggtcaaaggacaaaattttaaatgattaaagaatgcaag 11740768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 16157137 - 16157202
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||| ||||||||||  ||| |||| || ||||||||||||||| ||||||||    
T  16157137 aattagtgacatggcagggattaagtggggagagggacaaaattttaaatgattaaacaatgcaag 16157202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 17202545 - 17202480
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || ||||||||||||||  ||  ||||||| ||||||||| ||||| ||||||||    
T  17202545 aattagtgacatggcagtgattaagtggggagggggacgaaattttaaatgcttaaacaatgcaag 17202480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 17202670 - 17202747
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaaga 362  Q
    |||||||| | ||||||||||||| |||||||||||| |    || |||||| |||||||||||||| || |||||||    
T  17202670 ccacatcatcgaattagtgacgtggcagtgattaagttggtcaaatgacgaaattttaaatgattaatgattgcaaga 17202747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 18247230 - 18247165
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || | ||||||||||||  ||| ||||||| || |||||||||||| ||||||||    
T  18247230 aattagtgacatggcggtgattaagtggggagagggacgaaattctaaatgattaaataatgcaag 18247165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 20814417 - 20814482
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||| || |||||||||||| |  ||| |||| || ||||||||||||||| ||||||||    
T  20814417 aattagtgacatggcagtgattaagtagggagagggacaaaattttaaatgattaaacaatgcaag 20814482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 28269568 - 28269503
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  28269568 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 28269503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 39453581 - 39453646
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  39453581 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 39453646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 43159096 - 43159161
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||    
T  43159096 aattagtgacgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaag 43159161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 3529133 - 3529185
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatg 357  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||    
T  3529133 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatg 3529185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 11761988 - 11762064
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||| | ||||||||||||| |||||||||||| |    |||||| || |||||||||||||| || ||||||    
T  11761988 ccacatcatcaaattagtgacgtggcagtgattaagttggtcaaaggactaaattttaaatgattaatgattgcaag 11762064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 18670328 - 18670280
Alignment:
Q  313 tgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  18670328 tgattaagtggggagatggacgaaattttaaatgattaaacaatgcaag 18670280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 20814281 - 20814217
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| || |||||    
T  20814281 aattagtgacgtggcagtgattaagttggttaaaggacgaaattttaaatgattaatgattgcaa 20814217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 69111 - 69046
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  69111 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 69046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 37845 - 37910
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||| ||||    
T  37845 aattagtgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatacaag 37910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 37710 - 37641
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaagaata 365  Q
    ||||||||| ||| |||||||||||| |    ||||||||| |||||||||||||| || ||||||||||    
T  37710 aattagtgatgtggcagtgattaagttggtcaaaggacgaaattttaaatgattaatgattgcaagaata 37641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 1906 - 1850
Alignment:
Q  305 cgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaag 361  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||    
T  1906 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaag 1850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 14536 - 14602
Alignment:
Q  285 ccacatcagctaattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaa 351  Q
    |||| ||||||||| ||||| ||| ||||||||||||||  ||| ||||||| | ||||||||||||    
T  14536 ccacgtcagctaatcagtgatgtggcagtgattaagtggggagagggacgaaatcttaaatgattaa 14602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 2289 - 2225
Alignment:
Q  296 aattagtgacgtgacagtgattaagtggaaagaaggacgaatttttaaatgattaaagaatgcaa 360  Q
    ||||| |||| || ||||||||||||||  ||| |||| || ||||||||||||||| |||||||    
T  2289 aattattgacatggcagtgattaagtggggagagggacaaaattttaaatgattaaataatgcaa 2225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 9353 - 9325
Alignment:
Q  295 taattagtgacgtgacagtgattaagtgg 323  Q
    |||||||||||||||||||||||||||||    
T  9353 taattagtgacgtgacagtgattaagtgg 9325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University