View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_high_18 (Length: 372)
Name: NF17030_high_18
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 27845156 - 27845465
Alignment:
| Q |
13 |
tgaataaaataggaagaaggaacaaaa-agttgtactaggtagaaaaaggaagagaaatacaagtaggaaatagggaggttaaatgcttatgagagctat |
111 |
Q |
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| T |
27845156 |
tgaataaaataggaagaaggaacaaaagagttgtactaggtagaaaaaggaagagaaatacaggtaggaaatagggaggttaaatgcttatgagagctat |
27845255 |
T |
|
| Q |
112 |
atagctagggtagggaataagttagtacctgttatatttgtacataagtctaccaagagggacaaaagagacagttacttatacacacttttgttttgca |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27845256 |
atagctagggtcgggaataagttagtacctgttatatttgtacatatgtctaccaagagggacaaaagagacagttacttatacacacttttgttttgca |
27845355 |
T |
|
| Q |
212 |
gacaaaataagcatcaaaacttttgcttgnnnnnnnnnggaatcaagggatatagctttattttaacctttgttaactagccatttgcaaatacttactt |
311 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27845356 |
gacaaaataagcatcaaaacttttgcttgtttttttttggaatcaagggatatagctttattttaacctttgttaactagccatttgcaaatacttac-t |
27845454 |
T |
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| Q |
312 |
tgactgtaatt |
322 |
Q |
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||||||||||| |
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| T |
27845455 |
tgactgtaatt |
27845465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 27845558 - 27845593
Alignment:
| Q |
337 |
ttttataaggatgaattatactagcattgagtaaca |
372 |
Q |
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| T |
27845558 |
ttttataaggatgaattatactagcattgagtaaca |
27845593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 173 - 322
Target Start/End: Original strand, 20140192 - 20140343
Alignment:
| Q |
173 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnngg--aatcaagggatatagcttt |
270 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
20140291 |
T |
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| Q |
271 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
322 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140292 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
20140343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 173 - 322
Target Start/End: Complemental strand, 22192677 - 22192526
Alignment:
| Q |
173 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnngg--aatcaagggatatagcttt |
270 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
22192578 |
T |
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| Q |
271 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
322 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22192577 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
22192526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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