View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_high_20 (Length: 351)
Name: NF17030_high_20
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_high_20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 351
Target Start/End: Original strand, 7077596 - 7077916
Alignment:
| Q |
22 |
tcgtctagtttccctcgttattggttgaaaaggtttaaacccatttaataatttgaatatccttaaattagtgaatagtagggnnnnnnnctattgttta |
121 |
Q |
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| T |
7077596 |
tcgtctagtttccctcgttattggttgaaaaggtttaaactcatttaataatttgaatatactttaatgagtgaatagtagggaaaaaaactattgttta |
7077695 |
T |
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| Q |
122 |
atgtatatctttctataagcaaatttttgtttatatagagtacaagaggtttcacaatcgagtacaataaaatttggggacaatggtctcataaatgaag |
221 |
Q |
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| T |
7077696 |
at--atatctttctataagcaaatttttgtttatatagagtacaagaggtttcacaatcgggtacaataaaatttggagacaatggtctcataaatgaag |
7077793 |
T |
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| Q |
222 |
ttcagatcacaaaaagactatgtgttggatgcgacctcatgaaatcaaactaataatattcatctacaatgttttaaacaacggtctggtactcaaccca |
321 |
Q |
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| T |
7077794 |
tt---atcacaaaaagactatgtgttggatgcgacctcatgaaatcaaactagtaatattcatctacaatgttttaaacaacggtctggt----aaccca |
7077886 |
T |
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| Q |
322 |
caaaaacaaacaccctaaatcaagaattat |
351 |
Q |
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| T |
7077887 |
caaaaacaaacaccctaaatcaaaaattat |
7077916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 7078050 - 7078096
Alignment:
| Q |
305 |
gtctggtactcaacccacaaaaacaaacaccctaaatcaagaattat |
351 |
Q |
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| T |
7078050 |
gtctggtattcgacccaccaaaacaaacaccctaaatcaagaattat |
7078096 |
T |
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