View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_high_35 (Length: 235)
Name: NF17030_high_35
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_high_35 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 32782033 - 32781830
Alignment:
| Q |
13 |
agcataggagactttgaaagctatggggactgcttcaatagagactactaaaggtccaccttcacctgttcaaacatttctcggggcaatatcagctggt |
112 |
Q |
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| T |
32782033 |
agcattggagactttgaaagctatggggactgcttcaatagagactactaaaggtccaccttcacctgttcaaacatttctcggggcaatatcagctggt |
32781934 |
T |
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| Q |
113 |
gttatttctcttattttgtataagttcgccaccatcattgaggcgggtctgagccggcaaacaatttcagatgatttctctgtatgtcttctcctctcat |
212 |
Q |
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| T |
32781933 |
gttatttctcttattttgtataagttcgccaccatcatcgaggcgggtctgagccgacaaacaatttcagatgatttctctgtatgtcttctcctcccat |
32781834 |
T |
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| Q |
213 |
gtcc |
216 |
Q |
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|||| |
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| T |
32781833 |
gtcc |
32781830 |
T |
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Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 94778 - 94837
Alignment:
| Q |
19 |
ggagactttgaaagctatggggactgcttcaatagagactactaaaggtccaccttcacc |
78 |
Q |
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| T |
94778 |
ggagaccttgaaagctatgcggtctgcttcaatagagactgctaagggtccaccatcacc |
94837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 25806959 - 25806901
Alignment:
| Q |
20 |
gagactttgaaagctatggggactgcttcaatagagactactaaaggtccaccttcacc |
78 |
Q |
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| T |
25806959 |
gagaccttgaaagctatgcggtctgcttcaatagagactgctaagggtccaccatcacc |
25806901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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