View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_high_6 (Length: 477)
Name: NF17030_high_6
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 19272340 - 19271956
Alignment:
| Q |
18 |
gaaagttgatcctgcaaattaactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggacttt |
117 |
Q |
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| T |
19272340 |
gaaagttgatcctgcaaattaactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggacttt |
19272241 |
T |
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| Q |
118 |
cgggcacataaaggacaaatgtaattgataaagaagaaataatttggtcaatgtcaattgcgccaattccttgagactgtgtttcagaaccattggttga |
217 |
Q |
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| T |
19272240 |
cgggcacataaaggacaaatgtaattgataaagaagaaataatttggtcaatgtcaattgcgccaattccttgagactgtgtttcagaaccattggttga |
19272141 |
T |
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| Q |
218 |
gacgatactaggtaagtagctagatgtgatgagaggagaaaataaccttattaagagtaatatgatgaaatgcaccataatcgagaaccaatagagtaag |
317 |
Q |
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| T |
19272140 |
gacgatactaggtaagtagctagatgtgatgagaggagaaaataaccttattaagagtaatatgatgaaatgcaccataatcgagaaccaatagagtaag |
19272041 |
T |
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| Q |
318 |
tgaaggtaactggaaattgcaagcaactaatttaccaaggtgtgccccttaaataacaggtcctgagttctggagatactttacc |
402 |
Q |
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| T |
19272040 |
tgaaggtaactggaaattgcaagcaactaatttaccaaggtgtgccccttaaataacaggtcctgagttctgaagatactttacc |
19271956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 14168889 - 14169008
Alignment:
| Q |
26 |
atcctgcaaattaactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcaca |
125 |
Q |
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| T |
14168889 |
atcctgcaacgtaacattgctatttgtaaaggtgacaacacagtcatgcgaacgggtcaattgagtgatagaaattaaattaaatgggcatccaagaaca |
14168988 |
T |
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| Q |
126 |
taaaggacaaatgtaattga |
145 |
Q |
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| T |
14168989 |
taaaggacaaatgtaattga |
14169008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 55253474 - 55253358
Alignment:
| Q |
37 |
taactttgccattagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcacataaaggacaaa |
136 |
Q |
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| T |
55253474 |
taacattgcctttagtaaaggtgacaatacagtcttgcgaacgaatcagttgactgagagaaattaaattaaatggagctccaggaacataaaggacaga |
55253375 |
T |
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| Q |
137 |
tgtaattgataaagaag |
153 |
Q |
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| T |
55253374 |
tgtaattgacaaagaag |
55253358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 22784490 - 22784586
Alignment:
| Q |
48 |
ttagtaaatgtgacaacacagtcatgaaaacgagtcgatcgactgataaagattaaatcaaatggactttcgggcacataaaggacaaatgtaattga |
145 |
Q |
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|||||||| ||||||||||||||||| ||| |||| || || |||| | ||||||| ||||||| | ||||| ||| ||||||| ||||||||||| |
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| T |
22784490 |
ttagtaaaggtgacaacacagtcatgcgaacaagtcaattgagtgatggaaattaaattaaatgga-tatcgggaacacaaaggactaatgtaattga |
22784586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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