View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_1 (Length: 835)
Name: NF17030_low_1
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 21 - 583
Target Start/End: Complemental strand, 42637165 - 42636603
Alignment:
| Q |
21 |
ctcactacactaagctatccgttattgttggttttaatgattttggttgtgaaagaggacaataacgatgaagagaaatgataatagtctgcaatataat |
120 |
Q |
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| T |
42637165 |
ctcactacactaagctatccgttattgttggttttaatgattttggttgtgaaagaggacaataacgatgaagagaaatgataatagtctgtaatataat |
42637066 |
T |
|
| Q |
121 |
gtttttagcagtatttagagtcattctaacaggtttttaactgttttagttgagtttgtgtaaataatataatgcatgagtatggaataattattaggca |
220 |
Q |
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| T |
42637065 |
gtttttagcagtatttagagtcattctaacaggtttttaactgttttagttgagtttgtgtaaataatataatgcatgagtatggaataactattaggca |
42636966 |
T |
|
| Q |
221 |
tacaagacctttaaacatgctaaatcacctgaactagacaattttgtggtcatgttatactttcttagatggtatatcaggtgannnnnnnatgtatagt |
320 |
Q |
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| T |
42636965 |
tacaagacctttaaacatgctaaatcacctgaactagacaattttgtggtcatgttatactttcttagatggtatatcaggtgattttttgatgtatagt |
42636866 |
T |
|
| Q |
321 |
cactacaaatatttcagtgaggagaaatatgacaaggaatgaagaaaatcaaaaggatccactactagtacatgcacgatgcgtgctacaatccacgtgt |
420 |
Q |
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| T |
42636865 |
cactacaaatgtttcagtgaggagaaatatgacaaggaatgaagaaaatcaaaaggatccactactagtacatgcacgatgcgtgctacaatccacatgt |
42636766 |
T |
|
| Q |
421 |
cacgcaattgtgaagagttgaaagtgtctcgtcactgcttaagacgcatcatgtcgcgcaagactgttactgaaaatcatggagtgcggatagaaataat |
520 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42636765 |
catgcaattgtgaagagttgaaagtgtctcgtcactgcttaagacgcatcacatcgcgcaagactgttactgaaaatcatggagtgcggatagaaataat |
42636666 |
T |
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| Q |
521 |
tacttttataggttattggagattattggctaacccaaatatactattaagttgcttagaaat |
583 |
Q |
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| T |
42636665 |
tacttttataggttattggagattattggctaacccaaatatactattaagttgcttagaaat |
42636603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 584 - 829
Target Start/End: Complemental strand, 42636276 - 42636023
Alignment:
| Q |
584 |
taagtcacacatacctataaagtataaatacaagagacaaacaacacaaggtaaaatgattagtgttcttttgattagtgattgatacatgcatcaccca |
683 |
Q |
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| T |
42636276 |
taagtcacacatacctataaagtataaatacaagagacaaacaacacaaggtaaaatgattagtgttcttttgattagtgattgatacatgcatcaccca |
42636177 |
T |
|
| Q |
684 |
tgcactgtgtatcatgttgcacctttatgatcacatgcatagcattgtatctccaaatatac--------tgtacctttatgattacttgcatagcattg |
775 |
Q |
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| T |
42636176 |
tgcactgtgtatcatgttgtacctttatgatcacatgcatagcattgtatctccaaatatactatcatgttgtacctttatgattacttgcatagcatcg |
42636077 |
T |
|
| Q |
776 |
tatcacatgcatcgccaatgcactgatttacttcaatttttcccctatgctact |
829 |
Q |
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| T |
42636076 |
tatcacatgcatcaccaatgcactgatttacttcaatttttcccctatgttact |
42636023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 164 - 304
Target Start/End: Complemental strand, 33037062 - 33036922
Alignment:
| Q |
164 |
ttttagttgagtttgtgtaaataatataatgcatgagtatggaataattattaggcatacaagacctttaaacatgctaaatcacctgaactagacaatt |
263 |
Q |
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|||||||||||||| ||||||||| ||| ||||| |||| | | |||||||| ||||||||||| ||||||| ||||| || ||| |||||| | |
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| T |
33037062 |
ttttagttgagtttttgtaaataaatcaatatatgagcatggtagagctattaggcgtacaagaccttgaaacatgacaaatctcccaaaccagacaact |
33036963 |
T |
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| Q |
264 |
ttgtggtcatgttatactttcttagatggtatatcaggtga |
304 |
Q |
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| T |
33036962 |
ttgtggtcatgttatactttcttacaagatatatcaagtga |
33036922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 804
Target Start/End: Complemental strand, 49601203 - 49601162
Alignment:
| Q |
763 |
ttgcatagcattgtatcacatgcatcgccaatgcactgattt |
804 |
Q |
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| T |
49601203 |
ttgcatagcattgaatcacatacatcaccaatgcactgattt |
49601162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 15295636 - 15295595
Alignment:
| Q |
164 |
ttttagttgagtttgtgtaaataatataatgcatgagtatgg |
205 |
Q |
| |
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| T |
15295636 |
ttttagttgagtttatgtaaataatttaatggatgagtatgg |
15295595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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