View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_12 (Length: 434)
Name: NF17030_low_12
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 40776061 - 40776470
Alignment:
| Q |
18 |
gatagtacatagcattttcgaggacttttatttccgcaactattttttcttaccgatccccgatgatacgttaaacttgcacaagaagnnnnnnntgatg |
117 |
Q |
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| T |
40776061 |
gatagtacatagcattttcgaggacttttatttccgcaactattttttcttaccgatccccgatgatacgttaaacttgcacaagaagaaaaaaatgatg |
40776160 |
T |
|
| Q |
118 |
cgttaaaataaatacacgtaaatcctatctttcacaacaatataattgtttttcgtgaaaattatatgaattttttgtggacgtaaaatctcgttgagtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
40776161 |
cgttaaaataaatacacgtaaatcctatctttcacaacaatataattatttttcgttaaaattatatgaattttttgtggacttgaaatctcgttgcgtt |
40776260 |
T |
|
| Q |
218 |
gaactagcttgtccatttccccttt-gaaatttgatgaggaatgagtggcaacctaacacacatggaaaaagctatgcactttctctatctctagcaaca |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40776261 |
gaactagcttgtccatttccccttttgaaatttgatgaggaatgagtggcaacctaacacacatggaaaaagctatgcactttctctatctctagcaaca |
40776360 |
T |
|
| Q |
317 |
aacagaaaaatctagtccatgaaacttcctcatgaaatgaatggtcaccaaaatatcagtctctagggatgggtccttactgaccccacaaatatagttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40776361 |
aacagaaaaatctagtccatgaaacttcctcatgaaatgaatggtcaccaaaatatcagtctctagggatgggtccttactgaccccacaaatatagttc |
40776460 |
T |
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| Q |
417 |
tctgctcctc |
426 |
Q |
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||| ||||| |
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| T |
40776461 |
actgatcctc |
40776470 |
T |
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