View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_13 (Length: 434)
Name: NF17030_low_13
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 19474430 - 19474830
Alignment:
| Q |
18 |
caaacccgtgttattttagattctaataaatgtctctatctaaacctaaagtacattatttaaacaaagttagattctcaacttcttccctaactttttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474430 |
caaacccgtgttattttagattctaataaatgtctctatcgaaacctaaagtacattatttaaacaaagttagattctcaacttcttccctaactttttc |
19474529 |
T |
|
| Q |
118 |
atcaacatttcatggcttcctcatctcacaaactcttcatccttctctttataatcctcttctcactcacattacctctcaacatcaacacttccataac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19474530 |
atcaacatttcatggcttcctcatctcacaaactcttcatccttctctttacaatcctcttctcactcacattacctctcaacaccaacacttccataac |
19474629 |
T |
|
| Q |
218 |
cacatcactaaatcccaacaaactcacttccttaaaatctttatgcaaaacaacaccataccctaaactttgtttcaactcattaaaactttccatatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474630 |
cacatcactaaatcccaacaaactcacttccttaaaatctttatgcaaaacaacaccataccctaaactttgtttcaactcattaaaactttccatatcc |
19474729 |
T |
|
| Q |
318 |
ataaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagctctcgaatcttttccacgacgttggaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474730 |
ataaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagctctcgaatcttttccacgacgttggaa |
19474829 |
T |
|
| Q |
418 |
c |
418 |
Q |
| |
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| |
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| T |
19474830 |
c |
19474830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 51546810 - 51546918
Alignment:
| Q |
291 |
ttcaactcattaaaactttccatatccataaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagc |
390 |
Q |
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||||| |||| |||||| ||||| || ||| ||||||| ||||||||||| | | |||||||||||| || ||| || ||||||| ||||||||||||| |
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| T |
51546810 |
ttcaattcatcaaaactctccatctcaatagacataaatccaaacatcattaacatccttcttcattccctccaagtatcaatatctgaaaccacaaagc |
51546909 |
T |
|
| Q |
391 |
tctcgaatc |
399 |
Q |
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|||| |||| |
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| T |
51546910 |
tctctaatc |
51546918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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