View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_14 (Length: 433)
Name: NF17030_low_14
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 5 - 410
Target Start/End: Original strand, 42655109 - 42655514
Alignment:
| Q |
5 |
gagtgagatgaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaa |
104 |
Q |
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| T |
42655109 |
gagtgaaaagaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaa |
42655208 |
T |
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| Q |
105 |
ggaggattttttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaaagaaggcgatcttggtgac |
204 |
Q |
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| T |
42655209 |
ggaggattttttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaaagaaggcgatcttggtgac |
42655308 |
T |
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| Q |
205 |
tttcttctatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcat |
304 |
Q |
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| T |
42655309 |
tttcttctatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcat |
42655408 |
T |
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| Q |
305 |
attcaggatactttgctaggacatattcttctacatattccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatat |
404 |
Q |
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| T |
42655409 |
attcaggatactttgctaggacatattcctctacatattccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatat |
42655508 |
T |
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| Q |
405 |
tgcttc |
410 |
Q |
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| T |
42655509 |
tgcttc |
42655514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 43052866 - 43052467
Alignment:
| Q |
14 |
gaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggattt |
113 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
43052866 |
gaaccaaatactcagcatcaggcaaaccacaatgcttcaaaaccttattctgagcttgaatttccgggatcgagatgaatcttccaggaaaggatgattt |
43052767 |
T |
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| Q |
114 |
tttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaa---agaaggcgatcttggtgactttctt |
210 |
Q |
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| T |
43052766 |
tttattgagaatatcaagtagtcttgatggctctagctgtgtcatatccatttcaggagggtcgcttccaaaattataagatggtcttaatgactttcta |
43052667 |
T |
|
| Q |
211 |
ctatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcatattcag |
310 |
Q |
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| T |
43052666 |
ctatcatctgacagtggtaattttaaaggctccccattgatcataaaactggacatatctgtaccacttccatcgccttcaatgagatttgcatattctg |
43052567 |
T |
|
| Q |
311 |
gatactttgctaggacatattcttctacatattccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatattgcttc |
410 |
Q |
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| T |
43052566 |
gatactttgctaggacatattgttttacacattccatttctttcggtgtaattggacctgaccatctaaggccaataccgcggattgttgatattgcttc |
43052467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 244 - 410
Target Start/End: Original strand, 45479581 - 45479747
Alignment:
| Q |
244 |
tcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcatattcaggatactttgctaggacatattcttctacatatt |
343 |
Q |
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|||||||||||||| | ||||||||||| ||| |||||||||||||||| | ||| |||||| |||||||||||||| ||||| | ||| ||||||| |
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| T |
45479581 |
tcattgatgataaaggtagacatgtctatcccatttccatctccttcaatcaaccttgaatattctggatactttgctagaacatactgttcaacatatt |
45479680 |
T |
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| Q |
344 |
ccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatattgcttc |
410 |
Q |
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| T |
45479681 |
ccatttcttttggtgtgattggacctgaccatctaatatcgaattcgcggatagttgatatcgcttc |
45479747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 45479363 - 45479467
Alignment:
| Q |
44 |
aatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggattttttgttgagaatatcaagtagtcttgatgg |
143 |
Q |
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| T |
45479363 |
aatgcttcaaaaccttattttgagcttgaatttcggggatcgatatgaaacttccggtaaatgaggatttcttgttgagaatatcaagtaaccttgattg |
45479462 |
T |
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| Q |
144 |
ctcta |
148 |
Q |
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||||| |
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| T |
45479463 |
ctcta |
45479467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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