View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_17 (Length: 391)
Name: NF17030_low_17
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 8458630 - 8458987
Alignment:
| Q |
17 |
tataattaaatactgacacacatttgatactatagcacatggaaaaatctttgatttcagatagaatttcttctttttgttattgtaatacaagaggaat |
116 |
Q |
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| T |
8458630 |
tataattaaatactgacacacatttgatactatagcacatggaaaaatctttgatttcagatagaatttcttctttttgttattgtaatacaagaggaat |
8458729 |
T |
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| Q |
117 |
ttcagcaagaaacaaggtgcagaagattcagctgaccaaattttccattccaaggcttcctaatagatctttggtggcagaattgaattatgtaaataat |
216 |
Q |
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| T |
8458730 |
ttcagcaagaaacaaggtgcagaagattcagctgaccaaattttccattccaaggcttcctaatagatctttggtggcagaattgaattatgtaaataat |
8458829 |
T |
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| Q |
217 |
tacaaaataaaggacgatccatacaactccaaagtcaacaacagttcaatagcatctaaccaaaattcaaaggaagttgttaagcttcatttgattatgg |
316 |
Q |
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| T |
8458830 |
tacaaaataaaggatgatccatacaactccaaagtcaacaacagttcaatagcatctaaccaaaattcaaaggaagttgttaagcttcatttgattatgg |
8458929 |
T |
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| Q |
317 |
aagtcatatcagataggttagagatgcacaagattatcggaatccagcgcgacaattg |
374 |
Q |
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| T |
8458930 |
aagtcatatcagataggttagagatgcacaagattatcggaatccagcgcgacaattg |
8458987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 1618009 - 1618097
Alignment:
| Q |
84 |
ttcttctttttgttattgtaatacaagaggaatttcagcaagaaacaaggtgcagaagattcagctgaccaaattttccattccaaggcttc |
175 |
Q |
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| T |
1618009 |
ttcttctttttcttattgtcatagaggaagaatttctacaagaaacacggtg---aagattcagctatccaaattctccattccaagccttc |
1618097 |
T |
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