View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_18 (Length: 387)
Name: NF17030_low_18
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 4043187 - 4042834
Alignment:
| Q |
16 |
aatatctcgtattgtcagcaaacggaaaccgccaccaacgatcggttcagcttgaatttctaagttgggcattttggagaactgataagtgagaacggca |
115 |
Q |
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| T |
4043187 |
aatatctcgtattgtcagcaaacggaaaccgccaccaacgatcggttcagcttgaatttctaagttgggcattttggagaactgataagtgagaacggca |
4043088 |
T |
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| Q |
116 |
cataaaggtttgggagtgagagagaaaggtttgggagcgataagtgagaacgagagagaaaggttaaatcttaaataagaatgttggactgtgatggtgt |
215 |
Q |
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| T |
4043087 |
cataaaggtttgggagtgagagagaaaggtttgggagcgataagtgagaacgagagagaaaggttaaatcttaaataagaatgttggactgtgatggtgt |
4042988 |
T |
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| Q |
216 |
ggagtaggaggatgcgtgtgggccaatagactagggtgatggtgtgcgcgcgcgcaatatagtggagtaaggaacgacattaggacgcgatgatcaatga |
315 |
Q |
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| T |
4042987 |
ggagtaggaggatgcgtgtgggccaatagactagggtgatg--gtgcgcgcgcgcaatatagtggagtaaggaacgacattaggacgcgatgatcaatga |
4042890 |
T |
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| Q |
316 |
ctgaacacaacaccaaacaagtgctacaaaatgacatattacaacaattcatcatc |
371 |
Q |
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| T |
4042889 |
ctgaacacaacaccaaacaagtgctacaaaatgacatattacaacaattcatcatc |
4042834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 4175260 - 4175333
Alignment:
| Q |
289 |
acgacattaggacgcgatgatcaatgactgaacacaacaccaaacaagtgctacaaaatgacatattacaacaa |
362 |
Q |
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| T |
4175260 |
acgacattaggacgcgataatcaatgactgaacacaataccaaacaagtgctacgaattgtcatattacaacaa |
4175333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 4173922 - 4173994
Alignment:
| Q |
289 |
acgacattaggacgcgatgatcaatgactgaacacaacaccaaacaagtgctacaaaatgacatattacaacaa |
362 |
Q |
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||||||| ||||||||| ||||||||| ||||||| ||||||||| | |||| || |||||||||||||||| |
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| T |
4173922 |
acgacatagggacgcgataatcaatgaccgaacacat-accaaacaattactacgaattgacatattacaacaa |
4173994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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