View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_19 (Length: 385)
Name: NF17030_low_19
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 35361866 - 35361508
Alignment:
| Q |
18 |
acgaaatactccttgcaacgatgacaataagaaatactgactctttcgagtccaatgtcaatcatacaaatgactaggatagtaaagcatttcgaagtcg |
117 |
Q |
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| T |
35361866 |
acgaaatactccttgcaacgatgacaataagaaatactgactcttttgagtccaatgtcaatcatacaaatgactaggatagtaaagcatttcgaagtcg |
35361767 |
T |
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| Q |
118 |
gtaacaaggactaagtggatactcaaacaacaacgacgcagaaccttgtctatggaaataagcagaattcaacagatttgaaaaatattcagagaattct |
217 |
Q |
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| T |
35361766 |
gtaacaaggactaagtggatactcaaacaacaacgacgcaaaaccttgtctatggaaataagcagaattcaacatatttgaaaaatattcagagaattct |
35361667 |
T |
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| Q |
218 |
aggacatgaacacgcataacaggtagcactgacgcaagctaccttgccttccaacgtggaggaggcaataccgaatatcagaagagagatcacaaaatca |
317 |
Q |
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| T |
35361666 |
aggacatgaacacgcataacatgtagcactgacgcaagctaccttgccttccaacgtggaggaggcaataccgaatatcagaagagagatcacaaaatca |
35361567 |
T |
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| Q |
318 |
ccaccaaccatcaaaatccaaaaagatctggatgcgtcaccacatgactaaccctttgc |
376 |
Q |
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| T |
35361566 |
ccaccaaccatcaaaatccaaaaagatctggatgcgtcaccacatgactaaccctttgc |
35361508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 357
Target Start/End: Original strand, 13330428 - 13330627
Alignment:
| Q |
158 |
gaaccttgtctatggaaataagcagaattcaacagatttgaaaaatattcagagaattctaggacatgaacacgcataacaggtagcactgacgcaagct |
257 |
Q |
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| T |
13330428 |
gaaccttgtctttggaaacctgcataactcaacagatcagaaaaataatcagagaattttggaacatgaacacacataatcagtagcgctaatgcaagat |
13330527 |
T |
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| Q |
258 |
accttgccttccaacgtggaggaggcaataccgaatatcagaagagagatcacaaaatcaccaccaaccatcaaaatccaaaaagatctggatgcgtcac |
357 |
Q |
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| T |
13330528 |
acctcaccttttaacacgaacaaggcagtaccaaatatgagaagagagaacacagaaccaccaccaaccatcaaaattctgaaagatccggatgcatcac |
13330627 |
T |
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