View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_20 (Length: 384)
Name: NF17030_low_20
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_20 |
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| [»] scaffold0690 (4 HSPs) |
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Alignment Details
Target: scaffold0690 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 81 - 362
Target Start/End: Complemental strand, 441 - 160
Alignment:
| Q |
81 |
gcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaatattattaatttaaaatggtaaa |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
441 |
gcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaatattattaatttaaaatggtaaa |
342 |
T |
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| Q |
181 |
gtatgaaggaaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacagttttctattttgtattatctctagtgtgagaataatc |
280 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341 |
gtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgaccttaagaaagacagttttctattttgtattatctctagtgtgagaataatc |
242 |
T |
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| Q |
281 |
tcaagagaattattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctt |
362 |
Q |
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| T |
241 |
tcaagagaattattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctt |
160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 363 - 289
Alignment:
| Q |
289 |
attattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctta |
363 |
Q |
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| T |
363 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgacctta |
289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 233 - 159
Alignment:
| Q |
159 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtctaagtcaatgctatgatgactttgaccttg |
233 |
Q |
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| T |
233 |
attattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgaccttg |
159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 505 - 467
Alignment:
| Q |
18 |
attatgaatgaagaactctgattgcaagtcatttcacac |
56 |
Q |
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| T |
505 |
attatgaaggaagaactctgattgcaaatcatttcacac |
467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 81 - 362
Target Start/End: Original strand, 15911664 - 15911948
Alignment:
| Q |
81 |
gcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaatattattaatttaaaatggtaaa |
180 |
Q |
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| T |
15911664 |
gcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaatattattaatttaaaatggtaaa |
15911763 |
T |
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| Q |
181 |
gtatgaaggaaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacagttttctattttgtattatctctagtgtgagaataatc |
280 |
Q |
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| T |
15911764 |
gtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgaccttaagaaagacagttttctattttgtattatctctagtgtgagaataatc |
15911863 |
T |
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| Q |
281 |
tcaagagaattattaatttaaaacggta---atgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctt |
362 |
Q |
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| T |
15911864 |
tcaagagaattattaatttaaaacggtaattatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctt |
15911948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 15911742 - 15911816
Alignment:
| Q |
289 |
attattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctta |
363 |
Q |
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| T |
15911742 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgacctta |
15911816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 15911600 - 15911638
Alignment:
| Q |
18 |
attatgaatgaagaactctgattgcaagtcatttcacac |
56 |
Q |
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| T |
15911600 |
attatgaaggaagaactctgattgcaaatcatttcacac |
15911638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 9243911 - 9243964
Alignment:
| Q |
190 |
aaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacag |
243 |
Q |
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|||| ||| ||||| | |||||||||||||||| ||||||| |||||||||||| |
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| T |
9243911 |
aaaatttccaagtccaggtcaatgctatgatgagtttgaccctgagaaagacag |
9243964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 9336257 - 9336201
Alignment:
| Q |
190 |
aaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacagttt |
246 |
Q |
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|||| ||| ||||| | ||||||||||| |||||||||||| | ||||||||||||| |
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| T |
9336257 |
aaaatttccaagtccaggtcaatgctataatgactttgacccttagaaagacagttt |
9336201 |
T |
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