View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_23 (Length: 360)
Name: NF17030_low_23
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 655742 - 656087
Alignment:
| Q |
1 |
tcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattaccatgttcgttaagcttggttttaaaaacccatttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655742 |
tcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattaccatgttcgttaagcttggttttaaaaacccatttaa |
655841 |
T |
|
| Q |
101 |
ctccgatagctttgactccattcggcaaggttgtaagtctccacgtgccatttttctctatcgagtcaatctctttagccatcgcatctctcca-nnnnn |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655842 |
ctccaatagctttgactccattcggcaaggttgtaagtctccacgtgccatttttctctatcgagtcaatctctttagccatcgcatctctccatttttt |
655941 |
T |
|
| Q |
200 |
nnnctttcgcagcttcattgtatgtgactggatcttcttctgttattaccatcattgtttcttcctcctctgaaagtccttctctggttgtgtattctga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
655942 |
tttctttcgcagcttcattgtatgtgactggatcttcttctgttattatcatcattgcttcttcctcctctgaaagtccttctccggttgtgtattctga |
656041 |
T |
|
| Q |
300 |
catccatgtaggagctcttcgagatctgcatgtaggcgagtttggt |
345 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
656042 |
catccatgcaggagctcttcgagatctgcctgtaggcgagtttggt |
656087 |
T |
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