View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17030_low_26 (Length: 319)
Name: NF17030_low_26
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 74 - 300
Target Start/End: Original strand, 31537149 - 31537365
Alignment:
| Q |
74 |
agctaaaatttgacttcaaattttgattagatcctagcagttagaaggtttttgcctaattttgttaaaggaattaatatatttaaagcactgccaacat |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
31537149 |
agctaaaatttgacttcaaattttgattagatcctagcaattagaaggtttttgcctaatttttttaaaggaattaatatatttaaa----------cat |
31537238 |
T |
|
| Q |
174 |
atattgaccacgatctaagaaaccaaagcttacaatacatagtttcaataataagtataacaaaccaaaatctcatattctgcggcaataacaataacat |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31537239 |
atattgaccacgatctaagaaaccaaagcttacaatacatagtttcaataataagtataacaaaccaaaatctcatattctgcggcaataacaataacat |
31537338 |
T |
|
| Q |
274 |
gtgcctaattaaacttcatattgaact |
300 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
31537339 |
gtgcctaattaaacttcatatttaact |
31537365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 5305578 - 5305711
Alignment:
| Q |
48 |
tcataataattacgtagcaactctacagctaaaatttgacttcaaa-ttttgattagatcctagcagttagaaggtttttgcctaattttgttaaaggaa |
146 |
Q |
| |
|
|||||| |||| | || ||| ||||||| |||||||| |||||||| |||| |||||| ||||| |||| || |||| ||||||||| |||||| || |
|
|
| T |
5305578 |
tcataacaattccataccaaatctacagataaaatttaacttcaaaattttaattagagt-tagcaattaggagattttcacctaatttttttaaagaaa |
5305676 |
T |
|
| Q |
147 |
ttaatatatttaaagcactgccaacatatattgac |
181 |
Q |
| |
|
| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
5305677 |
taaatatatttaaatcactaccaacatatattgac |
5305711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 31714617 - 31714531
Alignment:
| Q |
203 |
ttacaatacatagtttcaataataagtataacaaaccaaaatctcatattctgcggcaataacaataacatgtgcctaattaaacttcatatt |
295 |
Q |
| |
|
||||| |||||||||| || |||||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31714617 |
ttacactacatagttttaacaataagtataccaaagaaaaatctcatgttcttg------aacaataacatgtgcctaattaaacttcatatt |
31714531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31537115 - 31537156
Alignment:
| Q |
1 |
acacagcaattttgtaccgaatctacattaaaacaactaaaa |
42 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
31537115 |
acacagcaattttgtaccgaatctgcattaaaatagctaaaa |
31537156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 2595266 - 2595352
Alignment:
| Q |
203 |
ttacaatacatagtttcaataataagtataacaaaccaaaatctcatattctgcggcaataacaataacatgtgcctaattaaacttcatatt |
295 |
Q |
| |
|
||||| |||||||||| || |||||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2595266 |
ttacactacatagttttaacaataagtataccaaagaaaaatctcatgttcttg------aacaataacatgtgcctaattaaacttcatatt |
2595352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 11578735 - 11578703
Alignment:
| Q |
263 |
aacaataacatgtgcctaattaaacttcatatt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11578735 |
aacaataacatgtgcctaattaaacttcatatt |
11578703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University