View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17030_low_3 (Length: 597)
Name: NF17030_low_3
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_3 |
 | |
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| [»] scaffold0094 (7 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 31242644 - 31242065
Alignment:
| Q |
1 |
gaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
31242644 |
gaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcacaacctgagacattgcaggtacgtaggaggatttaaa |
31242545 |
T |
|
| Q |
101 |
tgaatgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31242544 |
tgaatgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtt |
31242445 |
T |
|
| Q |
201 |
tgtatgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcatagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31242444 |
tgtatgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcatagcag |
31242345 |
T |
|
| Q |
301 |
aaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatg-nnnnnnnnggtatttcaattaatattctcaca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
31242344 |
aaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgcctaagatatgtttttttttggtatttcaattaatattctcaca |
31242245 |
T |
|
| Q |
400 |
actttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgcaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242244 |
actttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgcaa |
31242145 |
T |
|
| Q |
500 |
tccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttctt |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31242144 |
tccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttctt |
31242065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 155; Significance: 5e-82; HSPs: 7)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 273 - 579
Target Start/End: Original strand, 10781 - 11094
Alignment:
| Q |
273 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||| ||| | |
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|
| T |
10781 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatatattctgataaagaaaagctatattgcatgcctataataagttatt |
10880 |
T |
|
| Q |
373 |
nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatctt |
463 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
10881 |
t--ggaatttctatgttatcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttctacctcatctt |
10978 |
T |
|
| Q |
464 |
aatcagcaggaatcaatacagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta |
563 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10979 |
aatcagcaaaaatcaacgtagtaagtaattatgcaattatattctttctattctcccttgacattaacttttccaatccttgatagaatcgtgaacttta |
11078 |
T |
|
| Q |
564 |
attatctcgtgttctt |
579 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
11079 |
attctctcgtgttctt |
11094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 273 - 452
Target Start/End: Complemental strand, 9099 - 8913
Alignment:
| Q |
273 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
372 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||| |||||||||||| | ||||||||| ||| ||| | |
|
|
| T |
9099 |
atctaactaaacaagcatatcatagcagaaattttgattgtttaaaatatgatatattgtgataaagaaaagctatattgcatgcctataataagttatt |
9000 |
T |
|
| Q |
373 |
nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttc |
452 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8999 |
ta--gaatttctatgttgttaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttc |
8913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 10694 - 10782
Alignment:
| Q |
140 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
228 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10694 |
attaataagtatgtggcatgatgctcagaatattaggtttttaaatgttgttgctgatgtttgtatgtaatttctttgagataaattat |
10782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 10544 - 10652
Alignment:
| Q |
2 |
aggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaat |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| ||||||| | ||| |||| ||||| ||| |||||| |||| ||||||||||| |
|
|
| T |
10544 |
aggctgatttaagttttcttagagaagagattcaaaattcaggattcctttgtttgtcttcacaaccttagatattgcaagtac----aaggatttaaat |
10639 |
T |
|
| Q |
102 |
gaatgttctatct |
114 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10640 |
gaatgttctatct |
10652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 9186 - 9098
Alignment:
| Q |
140 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
228 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||| ||||| |||||||| | | |||||||||||| |||||||||| ||||||||| |
|
|
| T |
9186 |
attaataagtatgtggcatgatgctcacaatatcaggtttttaaatgttgttcatcatgtttgtatgttatttctttgatataaattat |
9098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 9336 - 9227
Alignment:
| Q |
2 |
aggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||| | | | |||| | ||| ||||||||||||||| || |||||||| |
|
|
| T |
9336 |
aggctgatttaagttttctcagagaagagattcaaaatctaggattcctttgtttcttttcacagcctaagacattgcaggtac----aagtatttaaat |
9241 |
T |
|
| Q |
102 |
gaatgttctatctc |
115 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9240 |
taatgttctatctc |
9227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 579
Target Start/End: Complemental strand, 8908 - 8865
Alignment:
| Q |
536 |
ccaatccttgatagaatcatgaactttaattatctcgtgttctt |
579 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
8908 |
ccaatccttgatagaatcgtgaactttaattatcttgtgttctt |
8865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 273 - 579
Target Start/End: Original strand, 17216101 - 17216413
Alignment:
| Q |
273 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
372 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| | ||||| ||||||| |||| | |
|
|
| T |
17216101 |
atctaactaaacaaggacatcgtagcagaaattttgattgttcaaaacatgatatattctgataaagaaaagctatattgtatgtctatgataagttatt |
17216200 |
T |
|
| Q |
373 |
nnnggtattt-------caattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaa |
465 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
17216201 |
tggaatttttatgttgtcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcc--acaagatcttctacctcgtcttaa |
17216298 |
T |
|
| Q |
466 |
tcagcaggaatcaatacagtgagtaattatgcaatccttttcttt-ccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaa |
564 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17216299 |
tcagcaaaaatcaatgcagtaagtaattatgcaattatattcttttccattctcccttggcattaacttttccaatccttgatagaatcgtgaactttag |
17216398 |
T |
|
| Q |
565 |
ttatctcgtgttctt |
579 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
17216399 |
ttatctcgtgctctt |
17216413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 382 - 579
Target Start/End: Complemental strand, 17214358 - 17214161
Alignment:
| Q |
382 |
tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata |
481 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
17214358 |
tcaattaatattctcacaactttgtttaattgcacaatgacaacaaccattgtcttcccaacaagatcttctacctcatcttaatcagcaagaatcaacg |
17214259 |
T |
|
| Q |
482 |
cagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttctt |
579 |
Q |
| |
|
|||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
17214258 |
cagtaagtaattattcaattgtattctttccattctcccttggcattaacttttccaatccttaatagaattgtgaactttaattatctcgtgttctt |
17214161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 17216014 - 17216102
Alignment:
| Q |
140 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
228 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17216014 |
attaataagtatgtggcatgatgctcaaaatatcaggtttttaaatgttgctgctgatgtttgtatttaatttctttgagataaattat |
17216102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 17214487 - 17214399
Alignment:
| Q |
140 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
228 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| | ||||| |||||||||| | |||||||||||||||||||||| ||||||||||| |
|
|
| T |
17214487 |
attaataagtatgtggcatgatgctcataatataaggtttttaaatgttgcttcagatgtttgtatgtaatttctttaagataaattat |
17214399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 17214633 - 17214528
Alignment:
| Q |
6 |
tgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaatgaat |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||| |||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
17214633 |
tgatttaagtttactcagagaagagattcaaaatccaggattcctttgtttgtcttcacaacctgagacattgcaggta----gaatgatttaaatgaat |
17214538 |
T |
|
| Q |
106 |
gttctatctc |
115 |
Q |
| |
|
|||||||||| |
|
|
| T |
17214537 |
gttctatctc |
17214528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 17215864 - 17215973
Alignment:
| Q |
2 |
aggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||| | | | |||| ||||||||||||| | | |||| |||| |||||| |
|
|
| T |
17215864 |
aggctgatttaagttttctcagagaagagattcaaaatctaggattcctttatttatcttcacaacctgagacattac----atgtagaaggacttaaat |
17215959 |
T |
|
| Q |
102 |
gaatgttctatctc |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17215960 |
gaatgttctatctc |
17215973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 17214400 - 17214367
Alignment:
| Q |
273 |
atctaactaaacaaggacatcatagcagaaattt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17214400 |
atctaactaaacaaggacatcatagcagaaattt |
17214367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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