View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_30 (Length: 277)
Name: NF17030_low_30
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 45524461 - 45524716
Alignment:
| Q |
18 |
aataaatagccatgatttaataaatgaattatgaaaaatttgtattaactatgtatgaacaagtgaaatgcaggttatctaaatgatctggaggcaacag |
117 |
Q |
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| T |
45524461 |
aataaatagccatgatttaataaatgaattatgaaaaatttgtattaactatgtatgaacaagtgaaatgcaggttatctaaatgatctggaggcaacag |
45524560 |
T |
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| Q |
118 |
agagaaccatagacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattgaaggaattaat |
217 |
Q |
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| T |
45524561 |
agagaaccatagacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattgaaggaattaat |
45524660 |
T |
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| Q |
218 |
caaatacaaaggatttcaagttgctccagctgaacttgaagctcttcttctctctc |
273 |
Q |
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| T |
45524661 |
caaatacaaaggatttcaagttgctccagctgaacttgaagctcttcttctgtctc |
45524716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 352062 - 352195
Alignment:
| Q |
126 |
atagacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattgaaggaattaatcaaataca |
225 |
Q |
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| T |
352062 |
atagacaaggaaggttggttgcatactggtgacattggattcattgacgatgatgatgagttgttcatagttgatagacttaaagaattgattaaataca |
352161 |
T |
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| Q |
226 |
aaggatttcaagttgctccagctgaacttgaagc |
259 |
Q |
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| T |
352162 |
aaggttttcaagttgctccagctgaacttgaagc |
352195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 53458375 - 53458526
Alignment:
| Q |
108 |
gaggcaacagagagaaccatagacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattga |
207 |
Q |
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||||| ||| ||||||| |||||||||||||| ||| | | |||||||| ||||| | ||||| || || || || | |||||||||||| |||| | |
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| T |
53458375 |
gaggcgacaaagagaactatagacaaagaaggatggctacaaacaggtgacattggtttaattgacgacgacgacgaactcttcattgttgatcgattaa |
53458474 |
T |
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| Q |
208 |
aggaattaatcaaatacaaaggatttcaagttgctccagctgaacttgaagc |
259 |
Q |
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| T |
53458475 |
aggaattgattaaatacaaaggataccaagtagctcctgctgagctcgaagc |
53458526 |
T |
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