View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_31 (Length: 276)
Name: NF17030_low_31
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 28240364 - 28240122
Alignment:
| Q |
18 |
aaagtaactacaaagtccctatttaaaggtaatctttgtggtcaaatgctatgaagcattgacactgtcacgtaaacaccaattataaattgtgaaaata |
117 |
Q |
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| T |
28240364 |
aaagtaactacaaagtccctatttaaaggcaatctttgtggtcaaatgctatgaagcattgacactggcacgtaaacaccaattataaattgtgaaaata |
28240265 |
T |
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| Q |
118 |
gcagtaattagatgtaattacatgtcagtgtcaggcattggacacgccttcaacttgaagtgtcggtgctacataggtcaagtgtaatttttgttcctcg |
217 |
Q |
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| T |
28240264 |
gcagtaattagatgtaattacttgtgagtgtcaggcattggacacgccttcaacttgaagtgtcggtgctacatagatcaagtataatttttgttcctcg |
28240165 |
T |
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| Q |
218 |
ccagatttcaatgcatgaacacctaattaaggttcgtaatatt |
260 |
Q |
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| T |
28240164 |
ccagatttcaatgcatgaacacccaattaaggttcgtaatatt |
28240122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 21158113 - 21158182
Alignment:
| Q |
165 |
cttcaacttgaagtgtcggtgctacataggtcaagtgt-aatttttgttcctcgccagatttcaatgcat |
233 |
Q |
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| T |
21158113 |
cttcaatttgaagtgttggtgttacataggtcaaatgtaaatttgtgttcctcaccagatttcaatgcat |
21158182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 28232602 - 28232548
Alignment:
| Q |
182 |
ggtgctacataggtcaagtgtaatttttgttcctcgccagatttcaatgcatgaa |
236 |
Q |
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| T |
28232602 |
ggtgctacgtaggtcaaatataatttttgttccttgccagattttaatgcatgaa |
28232548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 1638033 - 1637954
Alignment:
| Q |
153 |
cattggacacgccttcaacttgaagtgtcggtgctacataggtcaagtgtaatttttgttcctcgccagatttcaatgcat |
233 |
Q |
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| T |
1638033 |
cattggatacgtcttcaatttaaagtgtcggtgttttataggtcaaatgtaatttgtgttcctc-ccagatttcaatgcat |
1637954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 43163975 - 43163938
Alignment:
| Q |
155 |
ttggacacgccttcaacttgaagtgtcggtgctacata |
192 |
Q |
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| T |
43163975 |
ttggacacaacttcaacttgaagtgtcggtgctacata |
43163938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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