View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_33 (Length: 270)
Name: NF17030_low_33
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 33886893 - 33887144
Alignment:
| Q |
1 |
agaggattctaaaattcattactcgcaagaggtaataattaccgtttacttgaataccacatttatagttacttactttggactctaactataaagcacc |
100 |
Q |
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| T |
33886893 |
agaggattctaaaattcattactcgcaagaggtaataattaccgtttacttgaataccacatttatagttacttgctttggactctaactataaagcacc |
33886992 |
T |
|
| Q |
101 |
gatacacacactagatatgtctttacattgacacgtcgacattgataataatttgagaaaattgaatggttgagtttaaccacgcgtatcaatgtcatgt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33886993 |
gatacagacactagatatgtctttacattgacacgtcgacattgataataatttgagaaaattgaatggttgagtttaactacgcgtatcaatgtcatgt |
33887092 |
T |
|
| Q |
201 |
ctgacaccaaacacgccttgaatctaaagtgtccgctacatagtatataatg |
252 |
Q |
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| T |
33887093 |
ctgacaccaaacacgccttgaatctaaagtgtccgctacatagtatataatg |
33887144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 953687 - 953720
Alignment:
| Q |
129 |
tgacacgtcgacattgataataatttgagaaaat |
162 |
Q |
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| T |
953687 |
tgacacgtcgacattgataatgatttgagaaaat |
953720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 13211348 - 13211316
Alignment:
| Q |
130 |
gacacgtcgacattgataataatttgagaaaat |
162 |
Q |
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|
| T |
13211348 |
gacacgtcgacattgataataatttgagaaaat |
13211316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 10760909 - 10760876
Alignment:
| Q |
129 |
tgacacgtcgacattgataataatttgagaaaat |
162 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |
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|
| T |
10760909 |
tgacacgtcgacactgataataatttgagaaaat |
10760876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 2321923 - 2321953
Alignment:
| Q |
131 |
acacgtcgacattgataataatttgagaaaa |
161 |
Q |
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| T |
2321923 |
acacgtcgacattgataataatttgagaaaa |
2321953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 41600891 - 41600923
Alignment:
| Q |
131 |
acacgtcgacattgataataatttgagaaaatt |
163 |
Q |
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||||||| ||||||||||||||||||||||||| |
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|
| T |
41600891 |
acacgtcaacattgataataatttgagaaaatt |
41600923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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