View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_35 (Length: 255)
Name: NF17030_low_35
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 32766660 - 32766884
Alignment:
| Q |
9 |
aggagcacagatcacataaagttctttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatc |
108 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32766660 |
aggatcacagatcacataaagttgtttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatc |
32766759 |
T |
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| Q |
109 |
ctttttggtcaatacttagaagtggaactgaagaggcaagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaatgtgtgattt |
208 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32766760 |
cttttaggtcaatacttagaagtggaactgaagaggccagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaacgtgtgattt |
32766859 |
T |
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| Q |
209 |
gtgccaatgatattatgaatttggt |
233 |
Q |
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||||||||||||||||||||||||| |
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| T |
32766860 |
gtgccaatgatattatgaatttggt |
32766884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 32756285 - 32756504
Alignment:
| Q |
14 |
cacagatcacataaagttctttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatcctttt |
113 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32756285 |
cacagatcacataaagttgtttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatcctttt |
32756384 |
T |
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| Q |
114 |
tggtcaatacttagaagtggaactgaagaggcaagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaatgtgtgatttgtgcc |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32756385 |
aggtcaatacttagaagtggaactgaagaggccagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaacgtgtgatttgtgcc |
32756484 |
T |
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| Q |
214 |
aatgatattatgaatttggt |
233 |
Q |
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|||||||||||||||||||| |
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| T |
32756485 |
aatgatattatgaatttggt |
32756504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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