View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_37 (Length: 249)
Name: NF17030_low_37
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 5535096 - 5534890
Alignment:
| Q |
19 |
cagagactagagagagaaaatggaagttgtaatgagatagaatcgtgattactgatttgaggttttcacaatcagagatttgaggacttgaatcaattta |
118 |
Q |
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| T |
5535096 |
cagagactagagagagagaacggaagttgtaatgagatagaatcgtaattactgatttgaggttttcacaatcagagatttgaggacttgaatcaattta |
5534997 |
T |
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| Q |
119 |
aggtcgattgaaaactatcaattgaagattattgatttgttgatatttgatgatggagagaagaaccctaacattttcacaatcagagatgcaattgtcg |
218 |
Q |
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| T |
5534996 |
aggtcgattgaaaactatcaattgaagattattgatttgttgatatttgatgatggagagaagaaccctaacattttcacaatcagagatgcaattgtcg |
5534897 |
T |
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| Q |
219 |
attgaag |
225 |
Q |
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||||||| |
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| T |
5534896 |
attgaag |
5534890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 12107836 - 12107937
Alignment:
| Q |
31 |
agagaaaatggaagttgtaatgagatagaatcgtgattactgatttgaggttttcacaatcagagatttgaggacttgaatcaatttaaggtcgattgaa |
130 |
Q |
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|||||||| ||||||| |||||||| ||||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
12107836 |
agagaaaacggaagttataatgagagagaattgagattactaatttgaggttctcacaatcagagatttgaggacttgaatcaatttgagatcgattgaa |
12107935 |
T |
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| Q |
131 |
aa |
132 |
Q |
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| T |
12107936 |
aa |
12107937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 1527744 - 1527685
Alignment:
| Q |
63 |
gtgattactgatttgaggttttcacaatcagagatttg-aggacttgaatcaatttaaggt |
122 |
Q |
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||||||||||||| ||||||||||||| |||| ||||| || |||||||||||||| |||| |
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| T |
1527744 |
gtgattactgatt-gaggttttcacaaccagaaatttgtagaacttgaatcaatttgaggt |
1527685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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