View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17030_low_4 (Length: 523)

Name: NF17030_low_4
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17030_low_4
NF17030_low_4
[»] chr6 (4 HSPs)
chr6 (45-285)||(21424928-21425153)
chr6 (280-385)||(21477791-21477896)
chr6 (280-385)||(21425215-21425320)
chr6 (241-285)||(21477684-21477728)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 45 - 285
Target Start/End: Original strand, 21424928 - 21425153
Alignment:
Q  45 gtgctttcctttgtcttttataacgttatttgatttgttttgttgtattggtctgttatgctgatttggccagtcaaattgggtgtgctgcatggtatca 144  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21424928 gtgctttcctttgtcttttataacgttatttggtttgttttgttgtattggtctgttatgctgatttggccagtcaaattgggtgtgctgcatggtatca 21425027  T
Q  145 aggaagctagtagtgacttcagttttcacaagtattgggtgtgtcttatttttgatggaatttgtataagtattcatgtattatctttcnnnnnnnggct 244  Q
    |||||| ||||||||||||||||||||||||||||||||||||||               |||||||||||| ||||||||||||||||       ||||    
T  21425028 aggaagttagtagtgacttcagttttcacaagtattgggtgtgtc---------------tttgtataagtactcatgtattatctttctttttttggct 21425112  T
Q  245 gtgccattttaatgaattatcattgtttggcttttaaaaaa 285  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  21425113 gtgccattttaatgaattatctttgtttggattttaaaaaa 21425153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 21477791 - 21477896
Alignment:
Q  280 aaaaaatattaacatatgtgtcagtgtcattaaggtaaatgttaattaccccaatgtgaagattttattgtgtcaatttatttatttatcaaaaaacttg 379  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||    
T  21477791 aaaaaatattaacatatgtgtcagtgtcgttaaggtaaatgttaagtacctcaatgtgaagattttattgtgtcaatttatttatttatcataaaagttg 21477890  T
Q  380 aaaatt 385  Q
    ||||||    
T  21477891 aaaatt 21477896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 21425215 - 21425320
Alignment:
Q  280 aaaaaatattaacatatgtgtcagtgtcattaaggtaaatgttaattaccccaatgtgaagattttattgtgtcaatttatttatttatcaaaaaacttg 379  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||| |||    
T  21425215 aaaaaatattaacatatgtgtcagtgtcgttaaggtaaatgttaagtacctcaatgtgaagattttattgtgtcaatttatttatttaacataaaagttg 21425314  T
Q  380 aaaatt 385  Q
    ||||||    
T  21425315 aaaatt 21425320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 21477684 - 21477728
Alignment:
Q  241 ggctgtgccattttaatgaattatcattgtttggcttttaaaaaa 285  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  21477684 ggctgtgccattttaatgaattatctttgtttggcttttaaaaaa 21477728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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