View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_41 (Length: 242)
Name: NF17030_low_41
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 41750240 - 41750026
Alignment:
| Q |
19 |
atttcctacactcttaattaagtgtaacgtatacgctatcattgacgacatacggtgatacgacatgatcattttagagtagtatttatacgtattctac |
118 |
Q |
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| T |
41750240 |
atttcctacactcttaattaagtttaacgtatacgttatcattgacgacatacggtgatacgacatgatcattttagagtagtatttatacgtattctac |
41750141 |
T |
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| Q |
119 |
atgcatgtgaaatcacccaatacatgcactaatactatactatacacttactaattcatcattcatcaatgacgaaacaaactcctctaatcaccaggct |
218 |
Q |
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| T |
41750140 |
atgcatgtgaaatcacccaatacatgcactaatactatactatacacttactaattcatcattcatcaatgacgaaacaaactcctctaatcaccaggct |
41750041 |
T |
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| Q |
219 |
tctccctttgcttct |
233 |
Q |
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|||| |||||||||| |
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| T |
41750040 |
tctctctttgcttct |
41750026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 41756912 - 41756775
Alignment:
| Q |
19 |
atttcctacactcttaattaagtgtaacgtatacgctatcattgacgacatacggtgatacgacatgatcattttagagtagtatttatacgtattctac |
118 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756912 |
atttcctacacacttaattaactgtaacgtatacgttatcattaacgatatacggtgatacgacatgatcattttagagtagtatttatacgtattctac |
41756813 |
T |
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| Q |
119 |
atgcatgtgaaatcacccaatacatgcactaatactata |
157 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |
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| T |
41756812 |
atgcgtgtg-aatcacccaatacatgcactaatactata |
41756775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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