View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_5 (Length: 500)
Name: NF17030_low_5
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Complemental strand, 49521441 - 49520967
Alignment:
| Q |
16 |
cctttgttttcgacattgaatacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggc |
115 |
Q |
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| T |
49521441 |
cctttgttttcaacattgaatacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggc |
49521342 |
T |
|
| Q |
116 |
atgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521341 |
atgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattccc |
49521242 |
T |
|
| Q |
216 |
aattgaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgat |
315 |
Q |
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| T |
49521241 |
aattgaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgat |
49521142 |
T |
|
| Q |
316 |
ggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaagacaacatcattgatagaagcattcaagatg |
415 |
Q |
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| T |
49521141 |
ggtggtgctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaagacaacatcattgatagaagcattcaagatg |
49521042 |
T |
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| Q |
416 |
cctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatg |
490 |
Q |
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| T |
49521041 |
cctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatg |
49520967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 49510240 - 49510108
Alignment:
| Q |
74 |
caggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttga |
173 |
Q |
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|||||||||||||||| ||||||||||||||||| || |||||||||||||| || || |||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
49510240 |
caggtgcttctattaataaaggtggtcctagagagccatggcatgatattcattgtaaactagaaggacctgttgcttgggatgtgttgtgcaattttga |
49510141 |
T |
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| Q |
174 |
gcagaggtgggaaaagcaagttgggaagcaatt |
206 |
Q |
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| T |
49510140 |
gcaaagatgggaaaagcaagttggaaaacaatt |
49510108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 286 - 490
Target Start/End: Complemental strand, 49510025 - 49509821
Alignment:
| Q |
286 |
tggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaag |
385 |
Q |
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| T |
49510025 |
tggaatgttcagttgtttagatcaatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaag |
49509926 |
T |
|
| Q |
386 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttc |
485 |
Q |
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| T |
49509925 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttc |
49509826 |
T |
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| Q |
486 |
ctatg |
490 |
Q |
| |
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|||| |
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| T |
49509825 |
atatg |
49509821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 49510491 - 49510428
Alignment:
| Q |
16 |
cctttgttttcgacattgaatacaatccatcatgatgattttcatcaaccaaatttcccaggtg |
79 |
Q |
| |
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| T |
49510491 |
cctttgttttcaactctgaatacaattcatcatgatgattttcatcaaccaaatttcccaggtg |
49510428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 44662302 - 44662438
Alignment:
| Q |
43 |
catcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggac |
142 |
Q |
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|||||||||||||||||||| || || || || |||||||| || | |||||||||||||| ||||| ||||||||||| |||| | ||| ||||| | |
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| T |
44662302 |
catcatgatgattttcatcagcctaactttcctggtgcttcaatagaaaaaggtggtcctagggaaccttggcatgatatccactcaaggcttgaaggtc |
44662401 |
T |
|
| Q |
143 |
ctattgcatgggatgtgttgtacaattttgagcagag |
179 |
Q |
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| T |
44662402 |
ccattgcttgggatgttttgtttaactttgagcagag |
44662438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 491
Target Start/End: Original strand, 44662644 - 44662747
Alignment:
| Q |
388 |
aacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcct |
487 |
Q |
| |
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||||| || ||||| || ||||||||||| ||||| |||||||| ||| | ||||| || |||||||||||||||||||| |||||||| || |||| || |
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| T |
44662644 |
aacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatatttccttggaagttgct |
44662743 |
T |
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| Q |
488 |
atgc |
491 |
Q |
| |
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|||| |
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| T |
44662744 |
atgc |
44662747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 2416399 - 2416326
Alignment:
| Q |
403 |
agcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcct |
476 |
Q |
| |
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| T |
2416399 |
agcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcct |
2416326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 2416753 - 2416636
Alignment:
| Q |
46 |
catgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggaccta |
145 |
Q |
| |
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|||||||||||||||||||| || || ||||||||| | || | ||||| ||||| || ||||| |||||||| ||||| | | || |||||||| | |
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| T |
2416753 |
catgatgattttcatcaacctaactttccaggtgctgcaatcacaaaaggcggtccaagggaaccttggcatgacattcattcccgccttgaaggaccga |
2416654 |
T |
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| Q |
146 |
ttgcatgggatgtgttgt |
163 |
Q |
| |
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|||| ||||||||||||| |
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| T |
2416653 |
ttgcttgggatgtgttgt |
2416636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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