View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17030_low_6 (Length: 494)
Name: NF17030_low_6
Description: NF17030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17030_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 5789026 - 5789497
Alignment:
| Q |
16 |
gatctaacaattatgattgtcctgatgcaaatttacttgcattaacccaatttggttttgaaagtccaaatgcctacaagaacagtatatagtaaaatca |
115 |
Q |
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| T |
5789026 |
gatctaacaattatgattgtcctgatgcaaatttacttgcattaacccaatttggttttgaaagtccaaatgcctacaagaacagtatatagtaaaatca |
5789125 |
T |
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| Q |
116 |
gaaaatttaactgttgctataaaatgtatatcatgttttttgtgaaagaaatgtatcatgttttggtcattgttgatgttgctaatagcaataggagaaa |
215 |
Q |
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| T |
5789126 |
gaaaatttaactgttgctataaa-tgtatatcatgttttttgtgaaagaaatgtatcatgttttggtcattgttgatgttgctaatagcaataggagaaa |
5789224 |
T |
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| Q |
216 |
aattcaattgagtcaatactgagatctgaattttctgtattgcagagtggagcagaaacaatcagatgcttgcagaaggtgataggatccttggcattgg |
315 |
Q |
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| T |
5789225 |
aattcaattgagtcaatactgagatctgaattttctgtattgcagagtggagcagaaacaatcagatgcttgcagaaggtgataggatccttggcattgg |
5789324 |
T |
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| Q |
316 |
gcttggctagccttgtttttatgttctagagaagagatttccttgttattgttaccacgatatattcatatgtatcatttattttcnnnnnnnggtcctg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5789325 |
gcttggctagccttgtttttatgttctagagaagagatttccttgttattgttaccacgatatattcatatgtatcatttattttctttttttggtcctg |
5789424 |
T |
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| Q |
416 |
tcttgggctaacattaaatttatttgccattgnnnnnnnaaactcttattattctattacatattgatgatgt |
488 |
Q |
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| T |
5789425 |
tcttgggctaacattaaatttatttgccattgtttttttaaactcttattattctattacatattggtgatgt |
5789497 |
T |
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