View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17031_high_2 (Length: 510)
Name: NF17031_high_2
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 29565059 - 29564561
Alignment:
| Q |
1 |
actggtgtcttctgaagaacaagttccaattttttctgaaagattaactgttgttatgtcatgtatgcttgctctcctcttgtcttttcctcctgaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29565059 |
actggtgtcttctgaagaacaagttccaattttttctgaaagattaactgttgttatgtcatgtatgcttgctctcctcttgtcttttcctcctgaaagt |
29564960 |
T |
|
| Q |
101 |
tgtcttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgtgatgacgaaattgcgcgaaatatttctccaatcacctttgccatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564959 |
tgtcttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgtgatgacgaaattgcgcgaaatatttctccaatcacctttgccatact |
29564860 |
T |
|
| Q |
201 |
tctttaggcctagtagaaataatctgcaggaaatgtattctaacttaagatggcaacacaatgtttaagtctaaatcagccctacaaaaccaacttatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29564859 |
tctttaggcctagtagaaataatctgcaggaaatgtattctaacttaagatggcaacacaatgttttagtctaaatcagccctacaaaaccaacttatat |
29564760 |
T |
|
| Q |
301 |
cataacctattttaacgtaagatgatattcgaggattttgacctaactcgaccttacaaaatcatcttgcagtgtaaggattgtctaaattttacaagct |
400 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29564759 |
cataacatattctaacgtaagatgatattcgaggattttgacctaactcgaccttacaaaatcatcttgcagtgtaaggattgtctaaattttataagct |
29564660 |
T |
|
| Q |
401 |
ttatttagacttatcaccagcctatgtgaaagctaaaaaacattattcctacctcctaggtctaaaattacctttgtaaattccatcctttaatcctat |
499 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564659 |
ttatttagacttatcactagcctatgtgaaagctaaaaaacattattcctacctcctaggtctaaaattacctttgtaaattccatcctttaatcctat |
29564561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 35090973 - 35090876
Alignment:
| Q |
104 |
cttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgtgatgacgaaattgcgcgaaatatttctccaatcacctttgccatactt |
201 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||||||| ||||| || | || | ||||||||||||||| || |||||||| || |||||||||||||| |
|
|
| T |
35090973 |
cttatgtagtacttttgtgcatgacttgctacttgtgttggagtctttgtcacgacgaaattgcgcgagatgtttctccagtcgcctttgccatactt |
35090876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 25117079 - 25116919
Alignment:
| Q |
41 |
agattaactgttgttatgtcatgtatgcttgctctcctcttgtcttttcctcctgaaagttgtcttatgaaatacttttgagcatggcttgctacttgag |
140 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| | |
|
|
| T |
25117079 |
agattaactgttgttatgtcatgaatgcttgctcttcttttgtctttgcctcctgaaagttgtctgatgaaatatttctgagcatggctagctacttgtg |
25116980 |
T |
|
| Q |
141 |
ttggtgttctcgtgatgacgaaattgcgcgaaatatttctccaatcacctttgccatactt |
201 |
Q |
| |
|
||||||| || ||||| || || || | ||||| ||||||||||||||||| |||||||| |
|
|
| T |
25116979 |
ttggtgtcctagtgatcacaaagttccttgaaatgtttctccaatcaccttttccatactt |
25116919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 24522103 - 24521975
Alignment:
| Q |
73 |
tctcctcttgtcttttcctcctgaaagttgtcttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgtgatgacgaaattgcgcgaa |
172 |
Q |
| |
|
||||||||| || || ||||||||||| || || ||||||||||| |||||||| ||||| |||||||||||||| || ||| | |||||||| | || |
|
|
| T |
24522103 |
tctcctcttatccttccctcctgaaagctgcctaatgaaatacttctgagcatgacttgcgacttgagttggtgtccttgtggtcacgaaattcctagag |
24522004 |
T |
|
| Q |
173 |
atatttctccaatcacctttgccatactt |
201 |
Q |
| |
|
|| ||||||||||| || ||||||||||| |
|
|
| T |
24522003 |
atgtttctccaatctcccttgccatactt |
24521975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 34848529 - 34848489
Alignment:
| Q |
110 |
aaatacttttgagcatggcttgctacttgagttggtgttct |
150 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
34848529 |
aaatacttttgagcatggcttgcaacttgtgttggtgttct |
34848489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 46325981 - 46325941
Alignment:
| Q |
107 |
atgaaatacttttgagcatggcttgctacttgagttggtgt |
147 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
46325981 |
atgaaatacttttgtgcatgacttgctacttgtgttggtgt |
46325941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University