View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_high_20 (Length: 246)
Name: NF17031_high_20
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 4042903 - 4043119
Alignment:
| Q |
12 |
atgaaaagaaaatgtagctgagatgcataatatgagatatgatgcataaacagacatgcatagtattagaaaacaatataattaaagggattgaattgaa |
111 |
Q |
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| T |
4042903 |
atgaaaagaaaatgtagctgagatgcataatatgagatatgatgcataaacagatatgcatagtattagaaaacaatataattaaagggattgaattgaa |
4043002 |
T |
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| Q |
112 |
ttaaagaaaaagatggtgatggggtgacagatagagagtgagcacacatagcttcgagaatgaaacatcatacacgaaagtaccatgtgtgctcactctc |
211 |
Q |
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| T |
4043003 |
ttaaagaaaaagatggtgatggggtgacagatagagagtgagcacacatagcttcgagaatgaaacatcatacacgaaagtaccatgtgtgctcactctc |
4043102 |
T |
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| Q |
212 |
ttctgtcacctccctta |
228 |
Q |
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||||||||||||||||| |
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| T |
4043103 |
ttctgtcacctccctta |
4043119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 48230331 - 48230222
Alignment:
| Q |
122 |
agatggtgatggggtgacagatagagagtgagcacacatagcttcgagaatgaaac---atcatacacgaaagtaccatgtgtgctcactctcttctgtc |
218 |
Q |
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|||||||| |||||||||||||||||||| |||||| |||||||| || | ||||| ||| | || |||| |||||||||||||||||||||||||| |
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| T |
48230331 |
agatggtggtggggtgacagatagagagtaagcacatatagcttcaagcaggaaacataatcgtgcaagaaaacaccatgtgtgctcactctcttctgtc |
48230232 |
T |
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| Q |
219 |
acctccctta |
228 |
Q |
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||| |||||| |
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| T |
48230231 |
accaccctta |
48230222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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