View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_high_9 (Length: 403)
Name: NF17031_high_9
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 52243605 - 52243985
Alignment:
| Q |
16 |
acatatatgaaaataagttgatttcaaggggaaaaacaaatttaaacgttgaagtatcaagaatcattttaatggcaacttcaccgtgatactttaaagc |
115 |
Q |
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| T |
52243605 |
acatatatgaaaataagttgatttcaaggggaaaaacaaatttaaacgttgaagtatcaagaatcattttaatggcaacttcaccgtgatactttaaagc |
52243704 |
T |
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| Q |
116 |
atagcatggccactttgaaaacaacgtttgtattt-attcagtagnnnnnnn-accatcatttaatccattgagttgaatttgaaaaggccacaagataa |
213 |
Q |
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| T |
52243705 |
atagcatggccactttgaaaacaacgtttgtattttattcagtagttttttttaccatcatttaatccattgagttgaaattgaaaaagccacaagataa |
52243804 |
T |
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| Q |
214 |
gcatatctcatac--gtagtcccttgccttgacaaattactttgctcttgcctttctacaaaattatttcactagaaatgttgaaagttgctttcggagg |
311 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52243805 |
gcatatctcatacaggtagtcccttgccttgacaaattactttgctcttgcctttctacaaaattatttcactagaaatgttgaaagttgctttcggagg |
52243904 |
T |
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| Q |
312 |
tctatttatcattaattaggttcattgagatttatagcattaacaaatatacggtaaaagaaagccaaaagcatagaatta |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52243905 |
tctatttatcattaattaggttcattgagatttatagcattaacaaatatacggtaaaagaaagccaaaagcatagaatta |
52243985 |
T |
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