View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_low_14 (Length: 330)
Name: NF17031_low_14
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 42253891 - 42253750
Alignment:
| Q |
171 |
atatatgtaataaagattagaaaacttggagtatttcttacggattgtttatggataagaagtgaaaaagtagtttttgttttcattgaataagaagt-n |
269 |
Q |
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| T |
42253891 |
atatatgtaataaagattagaaaacttggagtatttcttacggattgtttatggataagaagtcaaaaagtagtttttgttttcattgaataagaagtaa |
42253792 |
T |
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| Q |
270 |
nnnnnnngcttataatctcttctccacacacaccctgtgaac |
311 |
Q |
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| T |
42253791 |
aaaaaaagcttataatctcttctccacacacaccctgtgaac |
42253750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 42254065 - 42253986
Alignment:
| Q |
1 |
actaaactcgaaatcactcgatcaactaaatctaagatcataatatgtgtggtgtgttttgaaatataaaacgagtcaat |
80 |
Q |
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| T |
42254065 |
actaaactcgaaatcactcgatcaactaaatctaagatcataatatgtgtggtgtgttttgaaatataaaacgagtcaat |
42253986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 42253958 - 42253915
Alignment:
| Q |
108 |
ggatacaagcattgacaaaaagaaaaattagcagctaacacttg |
151 |
Q |
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| T |
42253958 |
ggatacaagcattgacaaaaagaaaaattagcagctaacacttg |
42253915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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